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shenwei356 / taxonkit

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
https://bioinf.shenwei.me/taxonkit
MIT License
361 stars 29 forks source link

Convertion between taxonomic profiling tables with different taxonomy dump file versions? #45

Closed shenwei356 closed 2 years ago

shenwei356 commented 2 years ago

When profiling tables contain TaxIds, it's easy to update with newer taxdump files.

If not, we need to get the TaxIds, here's an example: https://github.com/shenwei356/sun2021-cami-profiles

shenwei356 commented 2 years ago

Oh right, we've added a command taxonkit profile2cami, which accepts profiles with TaxId and abundance and converts it to CAMI profiling format.