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shenwei356 / unikmer

A versatile toolkit for k-mers with taxonomic information
https://bioinf.shenwei.me/unikmer
MIT License
75 stars 7 forks source link

Index and search .unik files with COBS algorithm #10

Closed shenwei356 closed 4 years ago

shenwei356 commented 4 years ago
  1. unikmer db search performance is close to COBS, 4X faster in code start mode, but 2-3X slower in hot start mode.
  2. 7X slower than sourmash.