Adds accmapping module final code

sheynkman-lab / Long-Read-Proteogenomics

A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

MIT License

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Adds accmapping module final code #128

Closed gsheynkman closed 3 years ago

gsheynkman commented 3 years ago

PR checklist

[x] This comment contains a description of changes (with reason)
[ ] CHANGELOG.md is updated
[x] If you've fixed a bug or added code that should be tested, add tests!
[ ] Documentation in docs is updated

The accession mapping python script in here should be the one to implement in the final nextflow. It contains reasonably fast code to find "at-length" isoform matches with a few mismatches.

gsheynkman commented 3 years ago

@bj8th I'd like to go through this merge with you so that the correct files are incorporated.