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sheynkman-lab / Long-Read-Proteogenomics

A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
MIT License
38 stars 16 forks source link

Consider further subsampling test data (used in configs) #151

Closed cgpu closed 3 years ago

cgpu commented 3 years ago

An integration (CI) test is failing due to the Github actions restriction for disk size for the conf/test_with_sqanti.config

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- docker: failed to register layer: ApplyLayer exit status 1 stdout:  
- stderr: write /wineprefix64/drive_c/windows/Microsoft.NET/Framework64/v4.0.30319/SetupCache/v4.6.00081/NetFx_Full.mzz: 
- no space left on device.

The maximum storage space is 14GB so to be able to fix the CI test is to downsize some of the example files.

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https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners#supported-runners-and-hardware-resources

Currently, only the star index tar is 23GB.

   star_genome_dir           = 'https://zenodo.org/record/5076056/files/star_genome.tar.gz'