search

sheynkman-lab / Long-Read-Proteogenomics

A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
MIT License
37 stars 15 forks source link

Understanding channels in nextflow script. #49

Closed gsheynkman closed 3 years ago

gsheynkman commented 3 years ago

@cgpu

In the example here - https://www.nextflow.io/example1.html Will the intermediate files stored in the channel record be stored in the /data directory you mentioned? At the start of the codethon, you mentioned that if we need to store intermediate files, they can be written there? Or, will the contents of record not be saved after the pipeline completes, unless we explicitly store in /data?

gsheynkman commented 3 years ago

Including this thread to discuss how data is stored in nextflow.

We have a data input folder (e.g., sheynkman-lab/Long-Read-Proteogenomics/data) This is populated from the Zenodo repo

Where does the data from each module go, both intermediate/temporary (e.g., tmp.bam) or permanent?