sheynkman-lab / biosurfer

"Surf" the biological network, from genome to transcriptome to proteome and back to gain insights into human disease biology.
MIT License
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Ideas for encoding context and state-specific information #22

Closed gsheynkman closed 2 years ago

gsheynkman commented 3 years ago

Starting a thread here for ideas on how to encode group-specific information efficiently:

image

gsheynkman commented 3 years ago

Currently, each object holds a set which contains 1+ objects. There is also an associated alignment group object.

gsheynkman commented 3 years ago

Another idea for this was to use a Wrapper object. However, that did not work so well, as some methods/attributes were not fully propagating through the Wrapper layer.

Old test of the wrapper: https://docs.google.com/document/d/1O9DBJXK7jZdLF2dM9KJtiaGYingQiIx3q215jlzRrx4/edit?usp=sharing