Implement sQTL analysis

sheynkman-lab / biosurfer

"Surf" the biological network, from genome to transcriptome to proteome and back to gain insights into human disease biology.

MIT License

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Closed jsaquing closed 3 years ago

jsaquing commented 3 years ago

Input:

Output:

Table of each sQTL and several categories (base to detailed) of the effect on protein sequence
Images of each sQTL + isoforms
(if time) BED12 files so that the sQTL and isoforms can be visualized with apt coloring in UCSC browser

jsaquing commented 3 years ago

Subtasks: