Clean up imports and standardize how code accesses resources within project directory

sheynkman-lab / biosurfer

"Surf" the biological network, from genome to transcriptome to proteome and back to gain insights into human disease biology.

MIT License

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Open jsaquing opened 3 years ago

jsaquing commented 3 years ago

Expand __init__.py files so that

we can do from biosurfer import stuff and not from biosurfer.core.packages.overly.long.path import stuff
path to project install directory is easy to get in code (mainly for accessing SQLite files in databases directory but could also be useful for an eventual config file?)