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shilpagarg / DipAsm

MIT License
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Pstools pre_hap1 or pre_hap2 #21

Closed zhoudreames closed 3 years ago

zhoudreames commented 3 years ago

i got a problem by using pstools,the length of scaffold0l_hap1 and scaffold1l_hap2 is very long in pre_hap1.fa file ,longer than expected the true length of chromosome (<200Mb) ,however, the pre_hap2.fa file split scaffold0l_hap1/scaffold1l_hap2 into different smaller scaffolds.thoes result show in blew,i dont why ,could you help me ,thanks~ image image

zhoudreames commented 3 years ago

@lh3 @cschin @eldariont @shilpagarg

shilpagarg commented 3 years ago

Thank you for your patience. I am working on your request and will provide a general update for non-human assemblies soon. Hope this works.

zhoudreames commented 3 years ago

Thank you for your patience. I am working on your request and will provide a general update for non-human assemblies soon. Hope this works.

thank you for your reply~looking forward to your updates

shilpagarg commented 3 years ago

Please try purge_dups by Richard, Shane, Dengfeng et al.

zhoudreames commented 3 years ago

Thank you for your patience. I am working on your request and will provide a general update for non-human assemblies soon. Hope this works. when you development non-human assemblies by pstools? thanks!