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shilpagarg / pstools

MIT License
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Segmentation Fault FAILED (exit code 139) #9

Open grpiccoli opened 1 year ago

grpiccoli commented 1 year ago

./pstools haplotype_scaffold -t32 scaff_connections.txt pred_haplotypes.fa ./ start main All above 5M: 0 All above 1.5M: 0 38020 Segmentation fault ./pstools haplotype_scaffold -t32 scaff_connections.txt pred_haplotypes.fa ./

Hi I tried this as suggested https://github.com/shilpagarg/DipAsm/issues/16 in 1.5 TB of RAM and with 72, 64 and 32 cores I also tried running hifiasm with other parameters like -l 3 and -s 0.45 but I always get the same segmentation fault running in CentOS Linux release 7.4.1708 (Core)

I see 3 other people have asked this same question before, is there a fix for this? https://github.com/shilpagarg/pstools/issues/5 https://github.com/shilpagarg/pstools/issues/6 https://github.com/shilpagarg/pstools/issues/4 Thanks