set significance to NS if no control phospho

shimbalama / omics_dashboard

Dashboard to visualise various omics datasets from Hudson lab

MIT License

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set significance to NS if no control phospho #29

Closed shimbalama closed 1 year ago

shimbalama commented 1 year ago

shimbalama commented 1 year ago

WIP

shimbalama commented 1 year ago

for phos_pos, pos_df in df_melted.groupby('gene'):
            if not any(pos_df.query('test == @self.point_of_reference')[gene].notna()):
                self.df_FDR[phos_pos] = 0.0 #tiny P values due to no CTRL data need to be zeroed