shimming-toolbox rf-shimming-7t issues

shimming-toolbox / rf-shimming-7t

Repository for the paper "B1+ shimming in the cervical spinal cord at 7T"

https://shimming-toolbox.github.io/rf-shimming-7t/

MIT License

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issues

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colab notebook shows outputs

#106 jcohenadad opened 4 months ago
2
MRM paper vs. neurolibre inconsistency

#105 jcohenadad opened 4 months ago
6
Fix month in badges release version to 05

#104 mathieuboudreau closed 4 months ago
0
Updates to figures 3&4

#103 mathieuboudreau closed 4 months ago
0
Update GRE figure spacing

#102 dpapp86 closed 4 months ago
3
CSF/SC contrast figure does not have the same y-scale

#101 dpapp86 closed 4 months ago
43
ADD GRE figure & update captions

#100 agahkarakuzu closed 4 months ago
6
Create figure showing the GRE images

#99 dpapp86 closed 4 months ago
11
Add CV metric for B1+ homogeneity

#98 dpapp86 closed 4 months ago
10
Original submission: Reviewer 2 comments

#97 dpapp86 opened 6 months ago
2
Original submission: Reviewer 1 comments

#96 dpapp86 opened 6 months ago
0
Consolidate compatibility between NeuroLibre/Google Colab/repo2docker

#95 mathieuboudreau closed 7 months ago
0
Colab badge pointing to wrong from previous release

#94 jcohenadad opened 7 months ago
0
update of notebook

#93 jcohenadad opened 7 months ago
2
Compare manually drawing a rectangular ROI with the results derived from SC segmentation?

#92 dpapp86 opened 7 months ago
2
Convert to NeuroLibre submission

#91 mathieuboudreau closed 7 months ago
12
Remove legend on the GRE plots

#90 jcohenadad closed 7 months ago
1
Display B1+ efficiency value inside the figure

#89 jcohenadad closed 8 months ago
0
Increased thickness of line plots

#88 jcohenadad closed 8 months ago
0
Make plot lines thicker

#87 jcohenadad closed 8 months ago
0
Added vertebral levels on the plot

#86 jcohenadad closed 8 months ago
2
Number and content of figures/tables

#85 dpapp86 closed 7 months ago
4
Include/exclude MP(2)RAGE results?

#84 dpapp86 opened 8 months ago
3
Show vertebral levels in plots

#83 jcohenadad closed 8 months ago
0
Consider adding average values inside mask in B1+ map figure

#82 jcohenadad closed 8 months ago
0
Plots have the wrong axis orientation

#81 jcohenadad closed 8 months ago
1
Consider replacing Bonferroni correction by less conservative method

#80 jcohenadad closed 8 months ago
1
Added notebook duration

#79 jcohenadad closed 8 months ago
0
Clarify: how should the user supply the sudo password

#78 dpapp86 closed 8 months ago
2
Consider encapsulating SCT inside a Docker image

#77 jcohenadad closed 8 months ago
2
Indicate notebook duration

#76 jcohenadad closed 8 months ago
0
Wrong coverage for signal extraction

#75 jcohenadad closed 8 months ago
2
Consider changing smoothing kernel of CSF/SC T2starw signal

#74 jcohenadad closed 8 months ago
1
Add 'slow' emoji for "# Register *_T2starw to CoV_T2starw"

#73 jcohenadad closed 8 months ago
0
Added in B1+ map visualisation.

#72 dpapp86 closed 8 months ago
9
Process anat/T2starw (GRE) step: manual segmentations not found

#71 dpapp86 closed 8 months ago
10
Add statistics for CSF/SC values

#70 jcohenadad closed 8 months ago
0
Use manual CSF mask and improve CSF/SC figure

#69 jcohenadad closed 8 months ago
2
Rename `sub-04_acq-CoV_T1w_seg` according to our BIDS conventions

#68 jcohenadad opened 8 months ago
0
Improve CSF mask

#67 jcohenadad closed 8 months ago
2
Improve figure of SC/CSF ratio on T2starw

#66 jcohenadad closed 8 months ago
0
Register the other shim methods to the GRE CoV scan

#65 jcohenadad closed 8 months ago
2
Compute cord/CSF ratio and removing T1w bloc

#64 jcohenadad closed 8 months ago
4
Consider quantifying the ratio cord/CSF signal

#63 jcohenadad closed 8 months ago
4
Use manual seg and labeling

#62 jcohenadad closed 8 months ago
0
Register the CP_T1w with the CoV_T1w can be further improved

#61 jcohenadad opened 8 months ago
3
Use manual disc labels on the T1w scans

#60 jcohenadad closed 8 months ago
0
Upload manual disc labels to OpenNeuro

#59 jcohenadad closed 8 months ago
1
Strange deformation within session for `sub-04`

#58 jcohenadad closed 8 months ago
4
Moved up T1w processing bloc and rely on T1w segmentation and labeling

#57 jcohenadad closed 8 months ago
2