search

shingocat / lrscaf

TGS scaffolding
45 stars 6 forks source link

about gaps #35

Closed xieyy46 closed 2 years ago

xieyy46 commented 2 years ago

Hi！I want to know how lrscaf deal with gaps, filing it by Ns or utilizing the sequence from long-reads ?

shingocat commented 2 years ago

xieyy46,

LRScaf fills Ns on the gaps regions because of using low coverage of long reads.