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shiraz-shah / VFCs

Code for de novo discovery of viral families in virome data
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using PhyloTreeLib for cutting the tree to obtain viral genera, subfamilies and families #2

Open hlwCoBi opened 9 months ago

hlwCoBi commented 9 months ago

Hello! I am currently trialling your code for cutting the tree to obtain viral genera, subfamilies and families. However, my vOTUs.VOCs.tsv, vOTUs.VFCs.tsv, vOTUs.VOCs.tsv, vOTUs.subfamilies.tsv and vOTUs.subfamilies.tsv are all 0kb. Any insight on how to fix this? Thanks!!

hlwCoBi commented 9 months ago

Each time I run treetool.py, I generate a directory containing clusterinfo.txt. The first column of the file is the ID of the sequence, and the second column is the number.

shiraz-shah commented 9 months ago

Yes, those clusterinfo files are exactly what you need here. Rename that file to vOTUs.subfamilies.tsv etc.

On Fri, 26 Jan 2024 at 08:55, hlwCoBi @.***> wrote:

Each time I run treetool.py, I generate a directory containing clusterinfo.txt. The first column of the file is the ID of the sequence, and the second column is the number.

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