search

shirtsgroup / InterMol

Conversion tool for molecular simulations
MIT License
185 stars 53 forks source link

SyntaxError: invalid syntax #388

Open debanjansen48 opened 1 year ago

debanjansen48 commented 1 year ago

$ python2 convert.py -h Traceback (most recent call last): File "convert.py", line 13, in import intermol.gromacs as gmx File "/home/anaconda3/envs/intermol/lib/python2.7/site-packages/intermol/gromacs/init.py", line 112 logger.error(f'grompp failed with error code {proc.returncode} See {stderr_path}') ^ SyntaxError: invalid syntax

mattwthompson commented 1 year ago

Hi @debanjansen48 - Python 2 has been EOL since January 1, 2020 and is no longer supported I'm not sure what what point InterMol stopped supporting Python 2 but we can can only help with Python 3 code. Make sure you upgrade your scripts to Python 3 (ideally 3.8 or newer following NEP 29) and, while using conda environments, invoke python with an executable provided by the conda environment. (If you're not sure, run which python and look at the path to that executable.)