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shishenyxx / DeepMosaic

DeepMosaic is a deep-learning-based mosaic single nucleotide classification tool without the need of matched control information.
https://www.nature.com/articles/s41587-022-01559-w
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CRAM input #20

Closed gevro closed 22 hours ago

gevro commented 10 months ago

Hi, Does DeepMosaic work with CRAM format input?

shishenyxx commented 10 months ago

Hi gevro,

We currently only use bam input, but you can manually change the pysam parameters so that it directly works with a lossless cram file. We are planning to add official support for crams but don't have a schedule for official release yet.

Best,

Xiaoxu