search

shishenyxx / DeepMosaic

DeepMosaic is a deep-learning-based mosaic single nucleotide classification tool without the need of matched control information.
https://www.nature.com/articles/s41587-022-01559-w
Other
41 stars 5 forks source link

Multi-threaded support #24

Closed gevro closed 10 months ago

gevro commented 10 months ago

Hi, Do either of the deepmosaic steps support multi-threading to help speed up the pipeline? Thanks

shishenyxx commented 10 months ago

To speed up the pipeline

  1. You can try to split the input for both step 1 and step 2, refer to issue #7 and issue #8;
  2. You can try to run it on GPU nodes (only for step 2).

Best,

Xiaoxu

gevro commented 10 months ago

Ok thank you.