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shnizzedy / C-PAC

Configurable Pipeline for the Analysis of Connectomes
GNU Lesser General Public License v3.0
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🕵️ `OSError: [Errno 5] Input/output error` #4

Closed shnizzedy closed 3 years ago

shnizzedy commented 4 years ago

Google Groups C-PAC v.1.6.2 SameFile Error and time point missmatch error

OS error 1

OS error 2

📧 C-PAC v.1.6.2 SameFile Error and time point missmatch error

shnizzedy commented 4 years ago

Error comes with command like

docker run -i --rm -v /tmp/${USER}:/tmp -v /data_drive2/path/to/Analysis:/Data_preproc -v /data_drive2/output:/output fcpindi/c-pac:nightly /Data_preproc /output participant --n_cpus 20 --mem_gb 200 --pipeline_file /output/Pipeline_new.yml --participant_label a000 --save_working_dir

scripts like

$ MYTMP=$(mktemp -d /tmp/tmpdir.XXXXXXX)
$ cp -r /source/of/input/data $MYTMP
$ # Run analysis here
$ rsync -av $MYTMP/output_dir /real/output/directory
$ rm -rf $MYTMP