shogun-toolbox / shogun

Shōgun
http://shogun-toolbox.org
BSD 3-Clause "New" or "Revised" License
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Problem with shogun-3.2.0 on Ubuntu 14.04 #2622

Closed svle closed 9 years ago

svle commented 9 years ago

On Ubuntu 14.04 I run cmake -DPythonModular=ON ../ make and then I receive

[ 82%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/base/class_list.cpp.o [ 83%] Built target libshogun Scanning dependencies of target shogun Linking CXX shared library libshogun.so CMakeFiles/libshogun.dir/kernel/string/OligoStringKernel.cpp.o: file non riconosciuto: File troncato collect2: error: ld returned 1 exit status make[2]: * [src/shogun/libshogun.so.16.0] Errore 1 make[1]: * [src/shogun/CMakeFiles/shogun.dir/all] Errore 2 make: *\ [all] Errore 2

( file non riconosciuto: File troncato => file not recognized: File truncated )

Then Lenovo-IdeaPad-Y500:~/sources/shogun-3.2.0$ ls -l find ./ -name "OligoStringKernel.cpp.o" -rw-rw-r-- 1 xxxx xxxx 0 ott 31 12:16 ./build/src/shogun/CMakeFiles/libshogun.dir/kernel/string/OligoStringKernel.cpp.o

so in the make process there is a zero byte file. Some hints to solve? Thanks Saverio

Following the output of cmake , make and uname -a && cat /etc/*release

-- The C compiler identification is GNU 4.8.2 -- The CXX compiler identification is GNU 4.8.2 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Found CCache: /usr/bin/ccache

-- Found SWIG: /usr/bin/swig2.0 (found suitable version "2.0.11", minimum required is "2.0.4") -- Performing Test HAS_CXX11_FLAG -- Performing Test HAS_CXX11_FLAG - Success -- Checking C++11 support for "__func" -- Checking C++11 support for "func": works -- Checking C++11 support for "atomic" -- Checking C++11 support for "atomic": works -- Checking C++11 support for "auto" -- Checking C++11 support for "auto": works -- Checking C++11 support for "auto_ret_type" -- Checking C++11 support for "auto_ret_type": works -- Checking C++11 support for "class_override_final" -- Checking C++11 support for "class_override_final": not supported -- Checking C++11 support for "constexpr" -- Checking C++11 support for "constexpr": works -- Checking C++11 support for "cstdint" -- Checking C++11 support for "cstdint": works -- Checking C++11 support for "decltype" -- Checking C++11 support for "decltype": works -- Checking C++11 support for "initializer_list" -- Checking C++11 support for "initializer_list": works -- Checking C++11 support for "lambda" -- Checking C++11 support for "lambda": works -- Checking C++11 support for "long_long" -- Checking C++11 support for "long_long": works -- Checking C++11 support for "nullptr" -- Checking C++11 support for "nullptr": works -- Checking C++11 support for "regex" -- Checking C++11 support for "regex": not supported -- Checking C++11 support for "rvalue-references" -- Checking C++11 support for "rvalue-references": works -- Checking C++11 support for "sizeof_member" -- Checking C++11 support for "sizeof_member": works -- Checking C++11 support for "static_assert" -- Checking C++11 support for "static_assert": works -- Checking C++11 support for "variadic_templates" -- Checking C++11 support for "variadic_templates": works -- Looking for C++ include unordered_map -- Looking for C++ include unordered_map - found -- Using system's malloc -- Looking for isfinite -- Looking for isfinite - not found -- Looking for isinf -- Looking for isinf - found -- Looking for isnan -- Looking for isnan - found -- Looking for signgam -- Looking for signgam - found -- Looking for log2 -- Looking for log2 - found -- Looking for powl -- Looking for powl - found -- Looking for lgammal -- Looking for lgammal - found -- Looking for sqrtl -- Looking for sqrtl - found -- Looking for finite -- Looking for finite - found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for isinf -- Looking for isinf - found -- Looking for isnan -- Looking for isnan - found -- Performing Test HAVE_STD_ISINF -- Performing Test HAVE_STD_ISINF - Success -- Performing Test HAVE_STD_ISFINITE -- Performing Test HAVE_STD_ISFINITE - Success -- Performing Test HAVE_STD_ISNAN -- Performing Test HAVE_STD_ISNAN - Success -- Looking for xmmintrin.h -- Looking for xmmintrin.h - found -- Looking for emmintrin.h -- Looking for emmintrin.h - found -- Looking for arc4random -- Looking for arc4random - not found -- Found GDB: /usr/bin/gdb

-- Could NOT find MOSEK (missing: MOSEK_DIR MOSEK_INCLUDE_DIR MOSEK_LIBRARY) -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE

-- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp

-- Found PkgConfig: /usr/bin/pkg-config (found version "0.26") -- Looking for dgemm -- Looking for dgemm - found -- A library with BLAS API found. -- Looking for cheev -- Looking for cheev - found -- A library with LAPACK API found. -- Looking for clapack_dpotrf in /usr/lib/atlas-base/liblapack_atlas.so.3 -- Looking for clapack_dpotrf in /usr/lib/atlas-base/liblapack_atlas.so.3 - found -- Found ATLAS: /usr/lib/atlas-base/liblapack_atlas.so.3;/usr/lib/atlas-base/libcblas.so.3;/usr/lib/atlas-base/libf77blas.so.3;/usr/lib/atlas-base/libatlas.so.3;/usr/lib/liblapack.so.3

-- Found GLPK: /usr/lib/x86_64-linux-gnu/libglpk.so

-- Could NOT find CPLEX (missing: CPLEX_LIBRARY CPLEX_INCLUDE_DIR) -- Found Arpack : /usr/lib/libarpack.so -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.2.0", minimum required is "3.1.2") -- checking for one of the modules 'libColPack>=1.0.9;ColPack>=1.0.9' -- Found NLOPT: /usr/lib/x86_64-linux-gnu/libnlopt.so

-- Found LPSOLVE: /usr/lib/liblpsolve55.a

-- Could NOT find ColPack (missing: COLPACK_LIBRARIES COLPACK_LIBRARY_DIR COLPACK_INCLUDE_DIR) -- Could NOT find ARPREC (missing: ARPREC_LIBRARIES ARPREC_INCLUDE_DIR) -- Found Doxygen: /usr/bin/doxygen (found version "1.8.6") -- Found PythonInterp: /usr/bin/python (found version "2.7.6") -- checking for one of the modules 'libjson>=0.11;json>=0.11;json-c>=0.11' -- Found LibXml2: /usr/lib/x86_64-linux-gnu/libxml2.so (found version "2.9.1") -- Found HDF5: /usr/lib/x86_64-linux-gnu/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so

-- Found CURL: /usr/lib/x86_64-linux-gnu/libcurl.so (found version "7.35.0") -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8") -- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.6") -- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so - found -- Looking for lzma_auto_decoder in /usr/lib/x86_64-linux-gnu/liblzma.so -- Looking for lzma_auto_decoder in /usr/lib/x86_64-linux-gnu/liblzma.so - found -- Looking for lzma_easy_encoder in /usr/lib/x86_64-linux-gnu/liblzma.so -- Looking for lzma_easy_encoder in /usr/lib/x86_64-linux-gnu/liblzma.so - found -- Looking for lzma_lzma_preset in /usr/lib/x86_64-linux-gnu/liblzma.so -- Looking for lzma_lzma_preset in /usr/lib/x86_64-linux-gnu/liblzma.so - found -- Found LibLZMA: /usr/include (found version "5.1.0") -- Found SNAPPY: /usr/lib/libsnappy.so

-- Lzo Library /usr/lib/x86_64-linux-gnu/liblzo2.so -- Lzo Include Found in /usr/include -- Spinlock support found -- Found PROTOBUF: /usr/lib/x86_64-linux-gnu/libprotobuf.so

-- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython2.7.so (found version "2.7.6") -- Found NumPy: version "1.9.1" /usr/local/lib/python2.7/dist-packages/numpy/core/include -- =================================================================================================================== -- Summary of Configuration Variables

-- The following OPTIONAL packages have been found:

CCache
GDB
OpenMP
BLAS
LAPACK
Atlas
GLPK
ARPACK
Eigen3 (required version >= 3.1.2)
NLopt
LpSolve
Doxygen
LibXml2
HDF5
CURL
ZLIB
BZip2
LibLZMA
SNAPPY
LZO
Spinlock
Threads
Protobuf

-- The following REQUIRED packages have been found:

SWIG (required version >= 2.0.4)
PythonLibs
PythonInterp
NumPy

-- The following OPTIONAL packages have not been found:

Mosek
CPLEX
ColPack
ARPREC

-- =================================================================================================================== -- Enabled Interfaces -- libshogun is ON -- python modular is ON -- octave modular is OFF - enable with -DOctaveModular=ON -- java modular is OFF - enable with -DJavaModular=ON -- perl modular is OFF - enable with -DPerlModular=ON -- ruby modular is OFF - enable with -DRubyModular=ON -- csharp modular is OFF - enable with -DCSharpModular=ON -- R modular is OFF - enable with -DRModular=ON -- lua modular is OFF - enable with -DLuaModular=ON

-- Enabled legacy interfaces -- cmdline static is OFF - enable with -DCmdLineStatic=ON -- python static is OFF - enable with -DPythonStatic=ON -- octave static is OFF - enable with -DOctaveStatic=ON -- matlab static is OFF - enable with -DMatlabStatic=ON -- R static is OFF - enable with -DRStatic=ON -- =================================================================================================================== -- To compile shogun type -- make

-- To install shogun to /usr/local type -- make install

-- or to install to a custom directory -- make install DESTDIR=/my/special/path -- (or rerun cmake with -DCMAKE_INSTALL_PREFIX=/my/special/path) to just change the prefix -- =================================================================================================================== -- Configuring done -- Generating done -- Build files have been written to: /home/xxxx/sources/shogun-3.2.0/build

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<

Scanning dependencies of target class_list [ 0%] Running C++ protocol buffer compiler on ShogunVersion.proto [ 0%] Running C++ protocol buffer compiler on Chunks.proto [ 0%] Running C++ protocol buffer compiler on Headers.proto [ 0%] Generating /home/xxxx/sources/shogun-3.2.0/src/shogun/base/class_list.cpp [ 0%] Built target class_list Scanning dependencies of target HeadersProtobuf [ 0%] Built target HeadersProtobuf Scanning dependencies of target ShogunVersionProtobuf [ 0%] Built target ShogunVersionProtobuf Scanning dependencies of target version [ 1%] Generating version header [ 1%] Built target version Scanning dependencies of target ChunksProtobuf [ 1%] Built target ChunksProtobuf Scanning dependencies of target libshogun [ 1%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/Statistics.cpp.o [ 1%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/Cplex.cpp.o [ 1%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/Random.cpp.o [ 1%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/JacobiEllipticFunctions.cpp.o [ 1%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/SparseInverseCovariance.cpp.o [ 1%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/lapack.cpp.o [ 2%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/eigen3.cpp.o [ 2%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/Math.cpp.o [ 2%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/munkres.cpp.o [ 2%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/Integration.cpp.o [ 2%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/Mosek.cpp.o [ 2%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/linsolver/IterativeLinearSolver.cpp.o [ 2%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/linsolver/LinearSolver.cpp.o [ 3%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/linsolver/CGMShiftedFamilySolver.cpp.o [ 3%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/linsolver/ConjugateOrthogonalCGSolver.cpp.o [ 3%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/linsolver/IterativeShiftedLinearFamilySolver.cpp.o [ 3%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/linsolver/DirectLinearSolverComplex.cpp.o [ 3%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/linsolver/ConjugateGradientSolver.cpp.o [ 3%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/linsolver/DirectSparseLinearSolver.cpp.o [ 3%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/linop/LinearOperator.cpp.o [ 4%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/linop/DenseMatrixOperator.cpp.o [ 4%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/linop/MatrixOperator.cpp.o [ 4%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/linop/SparseMatrixOperator.cpp.o [ 4%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/eigsolver/DirectEigenSolver.cpp.o [ 4%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/eigsolver/LanczosEigenSolver.cpp.o [ 4%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/opfunc/RationalApproximation.cpp.o [ 4%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/opfunc/OperatorFunction.cpp.o [ 5%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/logdet/LogDetEstimator.cpp.o [ 5%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/logdet/opfunc/LogRationalApproximationIndividual.cpp.o [ 5%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/logdet/opfunc/LogRationalApproximationCGM.cpp.o [ 5%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/logdet/opfunc/DenseMatrixExactLog.cpp.o [ 5%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/logdet/computation/job/RationalApproximationIndividualJob.cpp.o [ 5%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/logdet/computation/job/RationalApproximationCGMJob.cpp.o [ 5%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/logdet/computation/job/DenseExactLogJob.cpp.o [ 6%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/logdet/computation/aggregator/IndividualJobResultAggregator.cpp.o [ 6%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/tracesampler/ProbingSampler.cpp.o [ 6%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/tracesampler/NormalSampler.cpp.o [ 6%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/ajd/QDiag.cpp.o [ 6%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/ajd/UWedge.cpp.o [ 6%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/ajd/JediDiag.cpp.o [ 6%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/ajd/JADiagOrth.cpp.o [ 7%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/ajd/FFDiag.cpp.o [ 7%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/ajd/JADiag.cpp.o [ 7%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/Perceptron.cpp.o [ 7%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/vw/VwRegressor.cpp.o [ 7%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/vw/VwParser.cpp.o [ 7%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/vw/learners/VwNonAdaptiveLearner.cpp.o [ 7%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/vw/learners/VwAdaptiveLearner.cpp.o [ 8%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/vw/VowpalWabbit.cpp.o [ 8%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/vw/vw_example.cpp.o [ 8%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/vw/VwEnvironment.cpp.o [ 8%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/vw/vw_math.cpp.o [ 8%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/vw/cache/VwCacheWriter.cpp.o [ 8%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/vw/cache/VwCacheReader.cpp.o [ 8%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/vw/cache/VwNativeCacheReader.cpp.o [ 9%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/vw/cache/VwNativeCacheWriter.cpp.o [ 9%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/vw/vw_label.cpp.o [ 9%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/LPM.cpp.o [ 9%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/PluginEstimate.cpp.o [ 9%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/NearestCentroid.cpp.o [ 9%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/AveragedPerceptron.cpp.o [ 9%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/GaussianProcessBinaryClassification.cpp.o [ 10%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/LDA.cpp.o [ 10%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/NewtonSVM.cpp.o [ 10%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/LibSVMOneClass.cpp.o [ 10%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/QPBSVMLib.cpp.o [ 10%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/SVMLightOneClass.cpp.o [ 10%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/SVMSGD.cpp.o [ 10%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/SGDQN.cpp.o [ 11%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/CPLEXSVM.cpp.o [ 11%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/GNPPSVM.cpp.o [ 11%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/GPBTSVM.cpp.o [ 11%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/SVMLin.cpp.o [ 11%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/GNPPLib.cpp.o [ 11%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/SVMOcas.cpp.o [ 11%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/LibSVM.cpp.o [ 12%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/MPDSVM.cpp.o [ 12%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/SVMLight.cpp.o [ 12%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/OnlineLibLinear.cpp.o [ 12%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/SVM.cpp.o [ 12%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/WDSVMOcas.cpp.o [ 12%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/LibLinear.cpp.o [ 12%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/svm/OnlineSVMSGD.cpp.o [ 13%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/FeatureBlockLogisticRegression.cpp.o [ 13%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/mkl/MKLMulticlass.cpp.o [ 13%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/classifier/mkl/MKLMulticlassGradient.cpp.o [ 13%] Building CXX object 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Linux xxxx-Lenovo-IdeaPad-Y500 3.13.0-39-generic #66-Ubuntu SMP Tue Oct 28 13:30:27 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux DISTRIB_ID=Ubuntu DISTRIB_RELEASE=14.04 DISTRIB_CODENAME=trusty DISTRIB_DESCRIPTION="Ubuntu 14.04.1 LTS" NAME="Ubuntu" VERSION="14.04.1 LTS, Trusty Tahr" ID=ubuntu ID_LIKE=debian PRETTY_NAME="Ubuntu 14.04.1 LTS" VERSION_ID="14.04" HOME_URL="http://www.ubuntu.com/" SUPPORT_URL="http://help.ubuntu.com/" BUG_REPORT_URL="http://bugs.launchpad.net/ubuntu/"

karlnapf commented 9 years ago

Thanks for the report! Can you please put such long error messages in a gist or pastebin? Otherwise its likely to get "too long didn't read". Thanks

svle commented 9 years ago

Hi, I have created a gist with the three outputs at

https://gist.github.com/svle

Do I add a comment with the above link and the description of what this link contains?

( I don't know how to use GitHub )

Thanks

Saverio

Il 21.11.2014 15:50 Heiko Strathmann ha scritto:

Thanks for the report! Can you please put such long error messages in a gist or pastebin? Otherwise its likely to get "too long didn't read". Thanks

Reply to this email directly or view it on GitHub [1].

Connetti gratis il mondo con la nuova indoona: hai la chat, le chiamate, le video chiamate e persino le chiamate di gruppo. E chiami gratis anche i numeri fissi e mobili nel mondo! Scarica subito l’app Vai su https://www.indoona.com/

iglesias commented 9 years ago

@svle, it is all right, no need to add more comments or descriptions. A quick search in stack overflow says that the error you are facing is resolved removing the object file.

Just to be sure, could you please remove completely your Shogun build directory (i.e., rm -rf build), create a new one and run again cmake and make?

svle commented 9 years ago

Hi, I have done this before reporting the problem with the same error. Now I've repeated again and nothing is changed. I guess that this is equivalent to start from the same initial conditions ( ok this is not an ODE or a PDE ) and the rerunning the same commands yields the same result. Maybe there is something in the cmake-make chain that produce a zero byte file.

Il 24.11.2014 10:26 Fernando Iglesias ha scritto:

@svle [1], it is all right, no need to add more comments or descriptions. A quick search in stack overflow says that the error you are facing is resolved removing the object file.

Just to be sure, could you please remove completely your Shogun build directory (i.e., rm -rf build), create a new one and run again cmake and make?

Reply to this email directly or view it on GitHub [2].

Connetti gratis il mondo con la nuova indoona: hai la chat, le chiamate, le video chiamate e persino le chiamate di gruppo. E chiami gratis anche i numeri fissi e mobili nel mondo! Scarica subito l’app Vai su https://www.indoona.com/

karlnapf commented 9 years ago

@svle Please don't get this wrong, but could you please put a bit more care into your messages here? There is a lot of unnecessary, spam-like text (your email client spamming, quotes of previous messages, italian error messages that we do not understand, etc), which basically avoids that anyone reads this thread. You can also edit previous messages and clean them up, which I kindly suggest you to do.

Now googling for your problem gives me the same suggestion as @iglesias and @lisitsyn gave. It is very weird that you get this problem. Did you make sure all other sources of error are checked (like full file-system, missing rights, etc)? Did you encounter a similar problem when compiling any other software?

svle commented 9 years ago

Sorry for the remarks. You are right. Now all is fine. Thanks