Unable to build R-modular interface

[beew]

Hi,

I tried to build the R-modular interface but make failed

[100%] [100%] Building CXX object src/interfaces/r_modular/CMakeFiles/r_modular.dir/sg_print_functions.cpp.o Building CXX object src/interfaces/r_modular/CMakeFiles/r_modular.dir/modshogunR_wrap.cxx.o In file included from /home/bee/opt/hdf5/include/hdf5.h:24:0, from /home/bee/Downloads/shogun-develop/src/shogun/io/HDF5File.h:19, from /home/bee/Downloads/shogun-develop/build/src/interfaces/r_modular/modshogunR_wrap.cxx:3085: /home/bee/opt/hdf5/include/H5public.h:198:33: warning: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wliteral-suffix]

define H5_PRINTF_HADDR_FMT "%"H5_PRINTF_LL_WIDTH"u"

                             ^

Linking CXX shared module modshogun.so Generating modshogun.RData f="modshogun.R"; fdata="modshogun.RData"; source ( f ) ; save ( list=ls ( all=TRUE ) ,file=fdata, compress=TRUE ) ; q ( save="no" ) Error in file(filename, "r", encoding = encoding) : cannot open the connection Calls: source -> file In addition: Warning message: In file(filename, "r", encoding = encoding) : cannot open file 'modshogun.R': No such file or directory Execution halted make[2]: * [src/interfaces/r_modular/modshogun.so] Error 1 make[1]: * [src/interfaces/r_modular/CMakeFiles/r_modular.dir/all] Error 2 make: *\ [all] Error 2

Tried both shogun 3.2.0 and developement version. R-static interface built fine though.

R version 3.1.2, OS is Ubuntu 14.04 64 bit.

Thanks for help in advance.

[karlnapf]

Some thoughts:

• the hdf5 warning makes me think this might be caused by your local installation, please double check
• There is another (might be closed) thread on R modular, it works in principle.
• try using the latest develop branch, we did lots of fixes for R after the last release (working on next one)

@vigsterkr @matthuska should be able to help, too

[matthuska]

I just checked out the latest development version and it compiles fine, though I'm using Ubuntu 14.10.

I don't know if it will make any difference but the HDF5 header in that warning (H5public.h) has been updated on my system so that I don't get the same warning you're getting. Here's my version:

$ aptitude show libhdf5-dev Version: 1.8.12+docs-1.1ubuntu1

[beew]

Hi Matthuska,

My hdf5 is a local self build because shogun doesn't build with hdf5-openmpi, which I installed for the whole system as I need it for other things.

See this thread https://github.com/shogun-toolbox/shogun/issues/1856

[matthuska]

Just to rule it out, can you modify the H5public.h file so that it doesn't trigger that warning? The details are here:

https://gitorious.org/kitware/itk/commit/f46f541516a33aa12be8e390b59f4b5871d57ab9

--- a/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5public.h +++ b/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5public.h @@ -195,7 +195,7 @@

elif H5_SIZEOF_HADDR_T ==H5_SIZEOF_LONG

define H5_PRINTF_HADDR_FMT "%lu"

elif H5_SIZEOF_HADDR_T ==H5_SIZEOF_LONG_LONG

-# define H5_PRINTF_HADDR_FMT "%"H5_PRINTF_LL_WIDTH"u" +# define H5_PRINTF_HADDR_FMT "%" H5_PRINTF_LL_WIDTH "u"

else

error "nothing appropriate for H5_PRINTF_HADDR_FMT"

endif

[beew]

Just updated my hdf5 to 1.8.12, the hdf5 warnings disappear but still cannot build R-Modular (shogun development from git)

Scanning dependencies of target r_modular [100%] [100%] Building CXX object src/interfaces/r_modular/CMakeFiles/r_modular.dir/modshogunR_wrap.cxx.o Building CXX object src/interfaces/r_modular/CMakeFiles/r_modular.dir/sg_print_functions.cpp.o In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1761:0, from /usr/include/python2.7/numpy/ndarrayobject.h:17, from /usr/include/python2.7/numpy/arrayobject.h:4, from /home/bee/Downloads/shogun/build/src/interfaces/python_modular/modshogunPYTHON_wrap.cxx:6318: /usr/include/python2.7/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]

warning "Using deprecated NumPy API, disable it by " \

^ cc1plus: warning: unrecognized command line option "-Wno-c++11-narrowing" [enabled by default] Linking CXX shared module _modshogun.so CMakeFiles/_python_modular.dir/modshogunPYTHON_wrap.cxx.o: In function shogun_CSGObject___getstate__': /home/bee/Downloads/shogun/build/src/interfaces/python_modular/modshogunPYTHON_wrap.cxx:8953: warning: the use oftmpnam' is dangerous, better use`mkstemp' [100%] Built target _python_modular Linking CXX shared module modshogun.so Generating modshogun.RData f="modshogun.R"; fdata="modshogun.RData"; source ( f ) ; save ( list=ls ( all=TRUE ) ,file=fdata, compress=TRUE ) ; q ( save="no" ) Error in file(filename, "r", encoding = encoding) : cannot open the connection Calls: source -> file In addition: Warning message: In file(filename, "r", encoding = encoding) : cannot open file 'modshogun.R': No such file or directory Execution halted make[2]: * [src/interfaces/r_modular/modshogun.so] Error 1 make[1]: * [src/interfaces/r_modular/CMakeFiles/r_modular.dir/all] Error 2 make: *\ [all] Error 2

[matthuska]

Are there any earlier errors? Perhaps related to swig? Maybe you can do a fresh build and post the entire build output into a gist so I can look through it for other possible problems. Swig should be generating modshogun.R and for some reason it doesn't seem to be happening.

[beew]

Hi, here is the complete build log

Scanning dependencies of target version Scanning dependencies of target ShogunVersionProtobuf [ 1%] Scanning dependencies of target ChunksProtobuf [ 1%] Scanning dependencies of target class_list Generating version header Running C++ protocol buffer compiler on ShogunVersion.proto [ 1%] Running C++ protocol buffer compiler on Chunks.proto [ 1%] Running C++ protocol buffer compiler on Chunks.proto [ 1%] [ 1%] [ 1%] Built target ShogunVersionProtobuf Built target ChunksProtobuf Running C++ protocol buffer compiler on Headers.proto Scanning dependencies of target HeadersProtobuf [ 1%] Built target version Scanning dependencies of target r_doxy2swig [ 1%] [ 1%] Built target HeadersProtobuf Scanning dependencies of target r_modular_src [ 2%] Generating /home/bee/Downloads/shogun/src/shogun/base/class_list.cpp Generating doxygen doc [ 2%] copying SWIG files [ 2%] Built target r_modular_src [ 3%] Built target class_list Scanning dependencies of target libshogun /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:63: warning: Compound shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:342: warning: Compound shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:237: warning: Compound shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:43: warning: Compound shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:476: warning: Compound shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:135: warning: Compound shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:304: warning: Compound shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:390: warning: Compound shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:562: warning: Compound shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:132: warning: Compound shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:218: warning: Compound shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:46: warning: Compound shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:39: warning: Member ShogunVersion_SGDataType (enumeration) of namespace shogun is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:32: warning: Member protobuf_AddDesc_Chunks_2eproto() (function) of namespace shogun is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:33: warning: Member protobuf_AssignDesc_Chunks_2eproto() (function) of namespace shogun is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:34: warning: Member protobuf_ShutdownFile_Chunks_2eproto() (function) of namespace shogun is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:32: warning: Member protobuf_AddDesc_Headers_2eproto() (function) of namespace shogun is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:33: warning: Member protobuf_AssignDesc_Headers_2eproto() (function) of namespace shogun is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:34: warning: Member protobuf_ShutdownFile_Headers_2eproto() (function) of namespace shogun is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:33: warning: Member protobuf_AddDesc_ShogunVersion_2eproto() (function) of namespace shogun is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:34: warning: Member protobuf_AssignDesc_ShogunVersion_2eproto() (function) of namespace shogun is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:35: warning: Member protobuf_ShutdownFile_ShogunVersion_2eproto() (function) of namespace shogun is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:46: warning: Member ShogunVersion_SGDataType_IsValid(int value) (function) of namespace shogun is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:51: warning: Member ShogunVersion_SGDataType_descriptor() (function) of namespace shogun is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:52: warning: Member ShogunVersion_SGDataType_Name(ShogunVersion_SGDataType value) (function) of namespace shogun is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:56: warning: Member ShogunVersion_SGDataType_Parse(const ::std::string &name, ShogunVersion_SGDataType _value) (function) of namespace shogun is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:47: warning: Member ShogunVersion_SGDataType_SGDataType_MIN (variable) of namespace shogun is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:48: warning: Member ShogunVersion_SGDataType_SGDataType_MAX (variable) of namespace shogun is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:49: warning: Member ShogunVersion_SGDataType_SGDataType_ARRAYSIZE (variable) of namespace shogun is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:51: warning: Member BoolChunk(const BoolChunk &from) (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:53: warning: Member operator=(const BoolChunk &from) (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:58: warning: Member unknown_fields() const (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:62: warning: Member mutable_unknown_fields() (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:69: warning: Member Swap(BoolChunk other) (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:73: warning: Member New() const (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:74: warning: Member CopyFrom(const ::google::protobuf::Message &from) (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:75: warning: Member MergeFrom(const ::google::protobuf::Message &from) (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:76: warning: Member CopyFrom(const BoolChunk &from) (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:77: warning: Member MergeFrom(const BoolChunk &from) (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:78: warning: Member Clear() (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:79: warning: Member IsInitialized() const (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:81: warning: Member ByteSize() const (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:82: warning: Member MergePartialFromCodedStream(::google::protobuf::io::CodedInputStream input) (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:84: warning: Member SerializeWithCachedSizes(::google::protobuf::io::CodedOutputStream output) const (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:86: warning: Member SerializeWithCachedSizesToArray(::google::protobuf::uint8 output) const (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:87: warning: Member GetCachedSize() const (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:94: warning: Member GetMetadata() const (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:101: warning: Member data_size() const (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:102: warning: Member clear_data() (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:104: warning: Member data(int index) const (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:105: warning: Member set_data(int index, bool value) (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:106: warning: Member add_data(bool value) (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:108: warning: Member data() const (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:110: warning: Member mutable_data() (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:66: warning: Member descriptor() (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:67: warning: Member default_instance() (function) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:103: warning: Member kDataFieldNumber (variable) of class shogun::BoolChunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:137: warning: Member Int32Chunk(const Int32Chunk &from) (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:139: warning: Member operator=(const Int32Chunk &from) (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:144: warning: Member unknown_fields() const (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:148: warning: Member mutable_unknown_fields() (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:155: warning: Member Swap(Int32Chunk other) (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:159: warning: Member New() const (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:160: warning: Member CopyFrom(const ::google::protobuf::Message &from) (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:161: warning: Member MergeFrom(const ::google::protobuf::Message &from) (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:162: warning: Member CopyFrom(const Int32Chunk &from) (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:163: warning: Member MergeFrom(const Int32Chunk &from) (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:164: warning: Member Clear() (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:165: warning: Member IsInitialized() const (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:167: warning: Member ByteSize() const (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:168: warning: Member MergePartialFromCodedStream(::google::protobuf::io::CodedInputStream input) (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:170: warning: Member SerializeWithCachedSizes(::google::protobuf::io::CodedOutputStream output) const (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:172: warning: Member SerializeWithCachedSizesToArray(::google::protobuf::uint8 output) const (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:173: warning: Member GetCachedSize() const (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:180: warning: Member GetMetadata() const (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:187: warning: Member data_size() const (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:188: warning: Member clear_data() (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:190: warning: Member data(int index) const (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:191: warning: Member set_data(int index,::google::protobuf::int32 value) (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:192: warning: Member add_data(::google::protobuf::int32 value) (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:194: warning: Member data() const (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:196: warning: Member mutable_data() (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:152: warning: Member descriptor() (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:153: warning: Member default_instance() (function) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:189: warning: Member kDataFieldNumber (variable) of class shogun::Int32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:223: warning: Member UInt32Chunk(const UInt32Chunk &from) (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:225: warning: Member operator=(const UInt32Chunk &from) (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:230: warning: Member unknown_fields() const (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:234: warning: Member mutable_unknown_fields() (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:241: warning: Member Swap(UInt32Chunk other) (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:245: warning: Member New() const (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:246: warning: Member CopyFrom(const ::google::protobuf::Message &from) (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:247: warning: Member MergeFrom(const ::google::protobuf::Message &from) (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:248: warning: Member CopyFrom(const UInt32Chunk &from) (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:249: warning: Member MergeFrom(const UInt32Chunk &from) (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:250: warning: Member Clear() (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:251: warning: Member IsInitialized() const (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:253: warning: Member ByteSize() const (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:254: warning: Member MergePartialFromCodedStream(::google::protobuf::io::CodedInputStream input) (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:256: warning: Member SerializeWithCachedSizes(::google::protobuf::io::CodedOutputStream output) const (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:258: warning: Member SerializeWithCachedSizesToArray(::google::protobuf::uint8 output) const (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:259: warning: Member GetCachedSize() const (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:266: warning: Member GetMetadata() const (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:273: warning: Member data_size() const (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:274: warning: Member clear_data() (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:276: warning: Member data(int index) const (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:277: warning: Member set_data(int index,::google::protobuf::uint32 value) (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:278: warning: Member add_data(::google::protobuf::uint32 value) (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:280: warning: Member data() const (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:282: warning: Member mutable_data() (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:238: warning: Member descriptor() (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:239: warning: Member default_instance() (function) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:275: warning: Member kDataFieldNumber (variable) of class shogun::UInt32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:309: warning: Member Int64Chunk(const Int64Chunk &from) (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:311: warning: Member operator=(const Int64Chunk &from) (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:316: warning: Member unknown_fields() const (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:320: warning: Member mutable_unknown_fields() (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:327: warning: Member Swap(Int64Chunk other) (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:331: warning: Member New() const (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:332: warning: Member CopyFrom(const ::google::protobuf::Message &from) (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:333: warning: Member MergeFrom(const ::google::protobuf::Message &from) (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:334: warning: Member CopyFrom(const Int64Chunk &from) (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:335: warning: Member MergeFrom(const Int64Chunk &from) (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:336: warning: Member Clear() (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:337: warning: Member IsInitialized() const (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:339: warning: Member ByteSize() const (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:340: warning: Member MergePartialFromCodedStream(::google::protobuf::io::CodedInputStream input) (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:342: warning: Member SerializeWithCachedSizes(::google::protobuf::io::CodedOutputStream output) const (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:344: warning: Member SerializeWithCachedSizesToArray(::google::protobuf::uint8 output) const (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:345: warning: Member GetCachedSize() const (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:352: warning: Member GetMetadata() const (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:359: warning: Member data_size() const (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:360: warning: Member clear_data() (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:362: warning: Member data(int index) const (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:363: warning: Member set_data(int index,::google::protobuf::int64 value) (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:364: warning: Member add_data(::google::protobuf::int64 value) (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:366: warning: Member data() const (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:368: warning: Member mutable_data() (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:324: warning: Member descriptor() (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:325: warning: Member default_instance() (function) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:361: warning: Member kDataFieldNumber (variable) of class shogun::Int64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:395: warning: Member UInt64Chunk(const UInt64Chunk &from) (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:397: warning: Member operator=(const UInt64Chunk &from) (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:402: warning: Member unknown_fields() const (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:406: warning: Member mutable_unknown_fields() (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:413: warning: Member Swap(UInt64Chunk other) (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:417: warning: Member New() const (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:418: warning: Member CopyFrom(const ::google::protobuf::Message &from) (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:419: warning: Member MergeFrom(const ::google::protobuf::Message &from) (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:420: warning: Member CopyFrom(const UInt64Chunk &from) (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:421: warning: Member MergeFrom(const UInt64Chunk &from) (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:422: warning: Member Clear() (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:423: warning: Member IsInitialized() const (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:425: warning: Member ByteSize() const (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:426: warning: Member MergePartialFromCodedStream(::google::protobuf::io::CodedInputStream input) (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:428: warning: Member SerializeWithCachedSizes(::google::protobuf::io::CodedOutputStream output) const (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:430: warning: Member SerializeWithCachedSizesToArray(::google::protobuf::uint8 output) const (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:431: warning: Member GetCachedSize() const (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:438: warning: Member GetMetadata() const (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:445: warning: Member data_size() const (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:446: warning: Member clear_data() (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:448: warning: Member data(int index) const (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:449: warning: Member set_data(int index,::google::protobuf::uint64 value) (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:450: warning: Member add_data(::google::protobuf::uint64 value) (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:452: warning: Member data() const (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:454: warning: Member mutable_data() (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:410: warning: Member descriptor() (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:411: warning: Member default_instance() (function) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:447: warning: Member kDataFieldNumber (variable) of class shogun::UInt64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:481: warning: Member Float32Chunk(const Float32Chunk &from) (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:483: warning: Member operator=(const Float32Chunk &from) (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:488: warning: Member unknown_fields() const (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:492: warning: Member mutable_unknown_fields() (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:499: warning: Member Swap(Float32Chunk other) (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:503: warning: Member New() const (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:504: warning: Member CopyFrom(const ::google::protobuf::Message &from) (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:505: warning: Member MergeFrom(const ::google::protobuf::Message &from) (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:506: warning: Member CopyFrom(const Float32Chunk &from) (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:507: warning: Member MergeFrom(const Float32Chunk &from) (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:508: warning: Member Clear() (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:509: warning: Member IsInitialized() const (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:511: warning: Member ByteSize() const (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:512: warning: Member MergePartialFromCodedStream(::google::protobuf::io::CodedInputStream input) (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:514: warning: Member SerializeWithCachedSizes(::google::protobuf::io::CodedOutputStream output) const (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:516: warning: Member SerializeWithCachedSizesToArray(::google::protobuf::uint8 output) const (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:517: warning: Member GetCachedSize() const (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:524: warning: Member GetMetadata() const (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:531: warning: Member data_size() const (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:532: warning: Member clear_data() (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:534: warning: Member data(int index) const (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:535: warning: Member set_data(int index, float value) (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:536: warning: Member add_data(float value) (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:538: warning: Member data() const (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:540: warning: Member mutable_data() (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:496: warning: Member descriptor() (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:497: warning: Member default_instance() (function) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:533: warning: Member kDataFieldNumber (variable) of class shogun::Float32Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:567: warning: Member Float64Chunk(const Float64Chunk &from) (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:569: warning: Member operator=(const Float64Chunk &from) (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:574: warning: Member unknown_fields() const (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:578: warning: Member mutable_unknown_fields() (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:585: warning: Member Swap(Float64Chunk other) (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:589: warning: Member New() const (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:590: warning: Member CopyFrom(const ::google::protobuf::Message &from) (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:591: warning: Member MergeFrom(const ::google::protobuf::Message &from) (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:592: warning: Member CopyFrom(const Float64Chunk &from) (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:593: warning: Member MergeFrom(const Float64Chunk &from) (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:594: warning: Member Clear() (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:595: warning: Member IsInitialized() const (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:597: warning: Member ByteSize() const (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:598: warning: Member MergePartialFromCodedStream(::google::protobuf::io::CodedInputStream input) (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:600: warning: Member SerializeWithCachedSizes(::google::protobuf::io::CodedOutputStream output) const (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:602: warning: Member SerializeWithCachedSizesToArray(::google::protobuf::uint8 output) const (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:603: warning: Member GetCachedSize() const (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:610: warning: Member GetMetadata() const (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:617: warning: Member data_size() const (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:618: warning: Member clear_data() (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:620: warning: Member data(int index) const (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:621: warning: Member set_data(int index, double value) (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:622: warning: Member add_data(double value) (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:624: warning: Member data() const (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:626: warning: Member mutable_data() (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:582: warning: Member descriptor() (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:583: warning: Member default_instance() (function) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.h:619: warning: Member kDataFieldNumber (variable) of class shogun::Float64Chunk is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:48: warning: Member VectorHeader(const VectorHeader &from) (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:50: warning: Member operator=(const VectorHeader &from) (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:55: warning: Member unknown_fields() const (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:59: warning: Member mutable_unknown_fields() (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:66: warning: Member Swap(VectorHeader other) (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:70: warning: Member New() const (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:71: warning: Member CopyFrom(const ::google::protobuf::Message &from) (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:72: warning: Member MergeFrom(const ::google::protobuf::Message &from) (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:73: warning: Member CopyFrom(const VectorHeader &from) (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:74: warning: Member MergeFrom(const VectorHeader &from) (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:75: warning: Member Clear() (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:76: warning: Member IsInitialized() const (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:78: warning: Member ByteSize() const (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:79: warning: Member MergePartialFromCodedStream(::google::protobuf::io::CodedInputStream input) (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:81: warning: Member SerializeWithCachedSizes(::google::protobuf::io::CodedOutputStream output) const (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:83: warning: Member SerializeWithCachedSizesToArray(::google::protobuf::uint8 output) const (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:84: warning: Member GetCachedSize() const (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:91: warning: Member GetMetadata() const (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:98: warning: Member has_len() const (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:99: warning: Member clear_len() (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:101: warning: Member len() const (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:102: warning: Member set_len(::google::protobuf::uint64 value) (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:105: warning: Member has_num_messages() const (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:106: warning: Member clear_num_messages() (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:108: warning: Member num_messages() const (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:109: warning: Member set_num_messages(::google::protobuf::uint32 value) (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:63: warning: Member descriptor() (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:64: warning: Member default_instance() (function) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:100: warning: Member kLenFieldNumber (variable) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:107: warning: Member kNumMessagesFieldNumber (variable) of class shogun::VectorHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:140: warning: Member MatrixHeader(const MatrixHeader &from) (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:142: warning: Member operator=(const MatrixHeader &from) (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:147: warning: Member unknown_fields() const (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:151: warning: Member mutable_unknown_fields() (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:158: warning: Member Swap(MatrixHeader other) (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:162: warning: Member New() const (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:163: warning: Member CopyFrom(const ::google::protobuf::Message &from) (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:164: warning: Member MergeFrom(const ::google::protobuf::Message &from) (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:165: warning: Member CopyFrom(const MatrixHeader &from) (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:166: warning: Member MergeFrom(const MatrixHeader &from) (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:167: warning: Member Clear() (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:168: warning: Member IsInitialized() const (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:170: warning: Member ByteSize() const (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:171: warning: Member MergePartialFromCodedStream(::google::protobuf::io::CodedInputStream input) (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:173: warning: Member SerializeWithCachedSizes(::google::protobuf::io::CodedOutputStream output) const (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:175: warning: Member SerializeWithCachedSizesToArray(::google::protobuf::uint8 output) const (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:176: warning: Member GetCachedSize() const (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:183: warning: Member GetMetadata() const (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:190: warning: Member has_num_cols() const (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:191: warning: Member clear_num_cols() (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:193: warning: Member num_cols() const (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:194: warning: Member set_num_cols(::google::protobuf::uint64 value) (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:197: warning: Member has_num_rows() const (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:198: warning: Member clear_num_rows() (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:200: warning: Member num_rows() const (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:201: warning: Member set_num_rows(::google::protobuf::uint64 value) (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:204: warning: Member has_num_messages() const (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:205: warning: Member clear_num_messages() (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:207: warning: Member num_messages() const (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:208: warning: Member set_num_messages(::google::protobuf::uint32 value) (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:155: warning: Member descriptor() (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:156: warning: Member default_instance() (function) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:192: warning: Member kNumColsFieldNumber (variable) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:199: warning: Member kNumRowsFieldNumber (variable) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:206: warning: Member kNumMessagesFieldNumber (variable) of class shogun::MatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:242: warning: Member SparseMatrixHeader(const SparseMatrixHeader &from) (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:244: warning: Member operator=(const SparseMatrixHeader &from) (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:249: warning: Member unknown_fields() const (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:253: warning: Member mutable_unknown_fields() (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:260: warning: Member Swap(SparseMatrixHeader other) (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:264: warning: Member New() const (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:265: warning: Member CopyFrom(const ::google::protobuf::Message &from) (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:266: warning: Member MergeFrom(const ::google::protobuf::Message &from) (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:267: warning: Member CopyFrom(const SparseMatrixHeader &from) (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:268: warning: Member MergeFrom(const SparseMatrixHeader &from) (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:269: warning: Member Clear() (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:270: warning: Member IsInitialized() const (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:272: warning: Member ByteSize() const (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:273: warning: Member MergePartialFromCodedStream(::google::protobuf::io::CodedInputStream input) (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:275: warning: Member SerializeWithCachedSizes(::google::protobuf::io::CodedOutputStream output) const (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:277: warning: Member SerializeWithCachedSizesToArray(::google::protobuf::uint8 output) const (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:278: warning: Member GetCachedSize() const (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:285: warning: Member GetMetadata() const (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:292: warning: Member has_num_vectors() const (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:293: warning: Member clear_num_vectors() (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:295: warning: Member num_vectors() const (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:296: warning: Member set_num_vectors(::google::protobuf::uint64 value) (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:299: warning: Member has_num_features() const (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:300: warning: Member clear_num_features() (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:302: warning: Member num_features() const (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:303: warning: Member set_num_features(::google::protobuf::uint64 value) (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:306: warning: Member num_feat_entries_size() const (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:307: warning: Member clear_num_feat_entries() (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:309: warning: Member num_feat_entries(int index) const (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:310: warning: Member set_num_feat_entries(int index,::google::protobuf::uint64 value) (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:311: warning: Member add_num_feat_entries(::google::protobuf::uint64 value) (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:313: warning: Member num_feat_entries() const (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:315: warning: Member mutable_num_feat_entries() (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:257: warning: Member descriptor() (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:258: warning: Member default_instance() (function) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:294: warning: Member kNumVectorsFieldNumber (variable) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:301: warning: Member kNumFeaturesFieldNumber (variable) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:308: warning: Member kNumFeatEntriesFieldNumber (variable) of class shogun::SparseMatrixHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:347: warning: Member StringListHeader(const StringListHeader &from) (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:349: warning: Member operator=(const StringListHeader &from) (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:354: warning: Member unknown_fields() const (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:358: warning: Member mutable_unknown_fields() (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:365: warning: Member Swap(StringListHeader other) (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:369: warning: Member New() const (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:370: warning: Member CopyFrom(const ::google::protobuf::Message &from) (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:371: warning: Member MergeFrom(const ::google::protobuf::Message &from) (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:372: warning: Member CopyFrom(const StringListHeader &from) (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:373: warning: Member MergeFrom(const StringListHeader &from) (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:374: warning: Member Clear() (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:375: warning: Member IsInitialized() const (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:377: warning: Member ByteSize() const (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:378: warning: Member MergePartialFromCodedStream(::google::protobuf::io::CodedInputStream input) (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:380: warning: Member SerializeWithCachedSizes(::google::protobuf::io::CodedOutputStream output) const (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:382: warning: Member SerializeWithCachedSizesToArray(::google::protobuf::uint8 output) const (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:383: warning: Member GetCachedSize() const (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:390: warning: Member GetMetadata() const (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:397: warning: Member has_num_str() const (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:398: warning: Member clear_num_str() (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:400: warning: Member num_str() const (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:401: warning: Member set_num_str(::google::protobuf::uint64 value) (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:404: warning: Member has_max_string_len() const (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:405: warning: Member clear_max_string_len() (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:407: warning: Member max_string_len() const (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:408: warning: Member set_max_string_len(::google::protobuf::uint64 value) (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:411: warning: Member str_len_size() const (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:412: warning: Member clear_str_len() (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:414: warning: Member str_len(int index) const (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:415: warning: Member set_str_len(int index,::google::protobuf::uint64 value) (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:416: warning: Member add_str_len(::google::protobuf::uint64 value) (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:418: warning: Member str_len() const (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:420: warning: Member mutable_str_len() (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:362: warning: Member descriptor() (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:363: warning: Member default_instance() (function) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:399: warning: Member kNumStrFieldNumber (variable) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:406: warning: Member kMaxStringLenFieldNumber (variable) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/Headers.pb.h:413: warning: Member kStrLenFieldNumber (variable) of class shogun::StringListHeader is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:115: warning: Member SGDataType (typedef) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:68: warning: Member ShogunVersion(const ShogunVersion &from) (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:70: warning: Member operator=(const ShogunVersion &from) (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:75: warning: Member unknown_fields() const (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:79: warning: Member mutable_unknown_fields() (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:86: warning: Member Swap(ShogunVersion other) (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:90: warning: Member New() const (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:91: warning: Member CopyFrom(const ::google::protobuf::Message &from) (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:92: warning: Member MergeFrom(const ::google::protobuf::Message &from) (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:93: warning: Member CopyFrom(const ShogunVersion &from) (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:94: warning: Member MergeFrom(const ShogunVersion &from) (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:95: warning: Member Clear() (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:96: warning: Member IsInitialized() const (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:98: warning: Member ByteSize() const (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:99: warning: Member MergePartialFromCodedStream(::google::protobuf::io::CodedInputStream input) (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:101: warning: Member SerializeWithCachedSizes(::google::protobuf::io::CodedOutputStream output) const (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:103: warning: Member SerializeWithCachedSizesToArray(::google::protobuf::uint8 output) const (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:104: warning: Member GetCachedSize() const (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:111: warning: Member GetMetadata() const (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:145: warning: Member has_version() const (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:146: warning: Member clear_version() (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:148: warning: Member version() const (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:149: warning: Member set_version(::google::protobuf::int32 value) (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:152: warning: Member has_data_type() const (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:153: warning: Member clear_data_type() (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:155: warning: Member data_type() const (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:156: warning: Member set_data_type(::shogun::ShogunVersion_SGDataType value) (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:83: warning: Member descriptor() (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:84: warning: Member default_instance() (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:121: warning: Member SGDataType_IsValid(int value) (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:131: warning: Member SGDataType_descriptor() (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:134: warning: Member SGDataType_Name(SGDataType value) (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:137: warning: Member SGDataType_Parse(const ::std::string &name, SGDataType *value) (function) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:116: warning: Member VECTOR (variable) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:117: warning: Member MATRIX (variable) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:118: warning: Member SPARSE_VECTOR (variable) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:119: warning: Member SPARSE_MATRIX (variable) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:120: warning: Member STRING_LIST (variable) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:124: warning: Member SGDataType_MIN (variable) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:126: warning: Member SGDataType_MAX (variable) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:128: warning: Member SGDataType_ARRAYSIZE (variable) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:147: warning: Member kVersionFieldNumber (variable) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/io/protobuf/ShogunVersion.pb.h:154: warning: Member kDataTypeFieldNumber (variable) of class shogun::ShogunVersion is not documented. /home/bee/Downloads/shogun/src/shogun/mathematics/Math.h:1810: warning: Member linspace(complex128_t start, complex128_t end, int32_t n) (function) of class shogun::CMath is not documented. /home/bee/Downloads/shogun/src/shogun/mathematics/Statistics.h:669: warning: Member mean(SGVector< complex128_t > vec) (function) of class shogun::CStatistics is not documented. [ 3%] [ 3%] [ 3%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/ensemble/CombinationRule.cpp.o Building CXX object src/shogun/CMakeFiles/libshogun.dir/ensemble/MeanRule.cpp.o Building CXX object src/shogun/CMakeFiles/libshogun.dir/ensemble/WeightedMajorityVote.cpp.o [ 3%] [ 3%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/ensemble/MajorityVote.cpp.o [ 3%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/metric/LMNN.cpp.o Building CXX object src/shogun/CMakeFiles/libshogun.dir/metric/LMNNImpl.cpp.o [ 3%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/Cplex.cpp.o [ 4%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/Math.cpp.o [ 4%] [ 4%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/Statistics.cpp.o Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/SparseInverseCovariance.cpp.o [ 4%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/munkres.cpp.o [ 4%] Building 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Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/opfunc/OperatorFunction.cpp.o [ 6%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/opfunc/RationalApproximation.cpp.o [ 6%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/logdet/LogDetEstimator.cpp.o [ 6%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/logdet/opfunc/DenseMatrixExactLog.cpp.o [ 6%] [ 6%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/logdet/opfunc/LogRationalApproximationIndividual.cpp.o Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/logdet/opfunc/LogRationalApproximationCGM.cpp.o /home/bee/Downloads/shogun/src/shogun/mathematics/Statistics.h:38: warning: argument 'values' of command @param is not found in the argument list of shogun::CStatistics::mean(SGVector< T > vec) /home/bee/Downloads/shogun/src/shogun/mathematics/Statistics.h:38: warning: The following parameters of shogun::CStatistics::mean(SGVector< T > vec) are not documented: parameter 'vec' [ 6%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/logdet/computation/job/RationalApproximationIndividualJob.cpp.o [ 6%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/logdet/computation/job/DenseExactLogJob.cpp.o [ 6%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/logdet/computation/job/RationalApproximationCGMJob.cpp.o [ 7%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/logdet/computation/aggregator/IndividualJobResultAggregator.cpp.o [ 7%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/mathematics/linalg/ratapprox/tracesampler/ProbingSampler.cpp.o [ 7%] Building CXX object 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/home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.cc:620:9: warning: declaration of ‘data_size’ shadows a member of 'this' [-Wshadow] int data_size = 0; ^ /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.cc: In member function ‘virtual int shogun::UInt32Chunk::ByteSize() const’: /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.cc:848:9: warning: declaration of ‘data_size’ shadows a member of 'this' [-Wshadow] int data_size = 0; ^ /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.cc: In member function ‘virtual int shogun::Int64Chunk::ByteSize() const’: /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.cc:1076:9: warning: declaration of ‘data_size’ shadows a member of 'this' [-Wshadow] int data_size = 0; ^ /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.cc: In member function ‘virtual int shogun::UInt64Chunk::ByteSize() const’: /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.cc:1304:9: warning: declaration of ‘data_size’ shadows a member of 'this' [-Wshadow] int data_size = 0; ^ /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.cc: In member function ‘virtual int shogun::Float32Chunk::ByteSize() const’: /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.cc:1532:9: warning: declaration of ‘data_size’ shadows a member of 'this' [-Wshadow] int data_size = 0; ^ /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.cc: In member function ‘virtual int shogun::Float64Chunk::ByteSize() const’: /home/bee/Downloads/shogun/src/shogun/io/protobuf/Chunks.pb.cc:1757:9: warning: declaration of ‘data_size’ shadows a member of 'this' [-Wshadow] int data_size = 0; ^ [ 86%] Built target libshogun Scanning dependencies of target shogun Scanning dependencies of target shogun-static Linking CXX static library libshogun.a Linking CXX shared library libshogun.so [ 86%] Built target shogun-static [ 86%] Built target shogun Scanning dependencies of target base_load_file_parameters Scanning dependencies of target base_load_all_file_parameters Scanning dependencies of target balanced_conditional_probability_tree [ 86%] [ 86%] Building CXX object examples/undocumented/libshogun/CMakeFiles/base_load_all_file_parameters.dir/base_load_all_file_parameters.cpp.o Building CXX object examples/undocumented/libshogun/CMakeFiles/base_load_file_parameters.dir/base_load_file_parameters.cpp.o [ 86%] Building CXX object examples/undocumented/libshogun/CMakeFiles/balanced_conditional_probability_tree.dir/balanced_conditional_probability_tree.cpp.o Linking CXX executable base_load_file_parameters Linking CXX executable base_load_all_file_parameters Linking CXX executable balanced_conditional_probability_tree [ 86%] Built target balanced_conditional_probability_tree CMakeFiles/base_load_all_file_parameters.dir/base_load_all_file_parameters.cpp.o: In CMakeFiles/base_load_file_parameters.dir/base_load_file_parameters.cpp.o: In function test_load_file_parameters()': base_load_file_parameters.cpp:(.text+0x76): warning: the use ofmktemp' is dangerous, better use mkstemp' ormkdtemp' function test_load_file_parameter()': base_load_all_file_parameters.cpp:(.text+0x90): warning: the use ofmktemp' is dangerous, better use mkstemp' ormkdtemp' Scanning dependencies of target base_map_parameters [ 86%] [ 86%] Built target base_load_file_parameters Built target base_load_all_file_parameters Scanning dependencies of target base_migration_multiple_dependencies Scanning dependencies of target base_migration_dropping_and_new [ 86%] Building CXX object examples/undocumented/libshogun/CMakeFiles/base_map_parameters.dir/base_map_parameters.cpp.o [ 86%] Building CXX object examples/undocumented/libshogun/CMakeFiles/base_migration_multiple_dependencies.dir/base_migration_multiple_dependencies.cpp.o [ 87%] Building CXX object examples/undocumented/libshogun/CMakeFiles/base_migration_dropping_and_new.dir/base_migration_dropping_and_new.cpp.o Linking CXX executable base_map_parameters Linking CXX executable base_migration_multiple_dependencies Linking CXX executable base_migration_dropping_and_new CMakeFiles/base_migration_multiple_dependencies.dir/base_migration_multiple_dependencies.cpp.o: In function test_migration()': base_migration_multiple_dependencies.cpp:(.text+0x8d): warning: the use ofmktemp' is dangerous, better use mkstemp' ormkdtemp' CMakeFiles/base_map_parameters.dir/base_map_parameters.cpp.o: In function test_load_file_parameter()': base_map_parameters.cpp:(.text+0x71): warning: the use ofmktemp' is dangerous, better use mkstemp' ormkdtemp' [ 87%] [ 87%] CMakeFiles/base_migration_dropping_and_new.dir/base_migration_dropping_and_new.cpp.o: In function test_migration()': base_migration_dropping_and_new.cpp:(.text+0x1b3): warning: the use ofmktemp' is dangerous, better use mkstemp' ormkdtemp' Built target base_map_parameters Built target base_migration_multiple_dependencies [ 87%] Built target base_migration_dropping_and_new Scanning dependencies of target base_migration_new_buggy Scanning dependencies of target base_migration_type_conversion Scanning dependencies of target base_parameter_map [ 87%] Building CXX object examples/undocumented/libshogun/CMakeFiles/base_migration_new_buggy.dir/base_migration_new_buggy.cpp.o [ 87%] [ 87%] Building CXX object examples/undocumented/libshogun/CMakeFiles/base_parameter_map.dir/base_parameter_map.cpp.o Building CXX object examples/undocumented/libshogun/CMakeFiles/base_migration_type_conversion.dir/base_migration_type_conversion.cpp.o Linking CXX executable base_parameter_map Linking CXX executable base_migration_new_buggy Linking CXX executable base_migration_type_conversion [ 87%] Built target base_parameter_map CMakeFiles/base_migration_new_buggy.dir/base_migration_new_buggy.cpp.o: In function test()': base_migration_new_buggy.cpp:(.text+0x54): warning: the use ofmktemp' is dangerous, better use mkstemp' ormkdtemp' [ 87%] Scanning dependencies of target basic_minimal Built target base_migration_new_buggy CMakeFiles/base_migration_type_conversion.dir/base_migration_type_conversion.cpp.o: In function test_migration()': base_migration_type_conversion.cpp:(.text+0x7ec): warning: the use ofmktemp' is dangerous, better use mkstemp' ormkdtemp' Scanning dependencies of target classifier_featureblocklogisticregression [ 87%] Built target base_migration_type_conversion [ 87%] Scanning dependencies of target classifier_gaussian_process_binary_classification Building CXX object examples/undocumented/libshogun/CMakeFiles/basic_minimal.dir/basic_minimal.cpp.o [ 87%] Building CXX object examples/undocumented/libshogun/CMakeFiles/classifier_featureblocklogisticregression.dir/classifier_featureblocklogisticregression.cpp.o Linking CXX executable basic_minimal [ 87%] Building CXX object examples/undocumented/libshogun/CMakeFiles/classifier_gaussian_process_binary_classification.dir/classifier_gaussian_process_binary_classification.cpp.o Linking CXX executable classifier_featureblocklogisticregression Linking CXX executable classifier_gaussian_process_binary_classification [ 87%] Built target basic_minimal Scanning dependencies of target classifier_gaussiannaivebayes [ 87%] Building CXX object examples/undocumented/libshogun/CMakeFiles/classifier_gaussiannaivebayes.dir/classifier_gaussiannaivebayes.cpp.o [ 87%] Built target classifier_featureblocklogisticregression Scanning dependencies of target classifier_knn [ 87%] [ 87%] Built target classifier_gaussian_process_binary_classification Building CXX object examples/undocumented/libshogun/CMakeFiles/classifier_knn.dir/classifier_knn.cpp.o Scanning dependencies of target classifier_lda Linking CXX executable classifier_gaussiannaivebayes [ 87%] Building CXX object examples/undocumented/libshogun/CMakeFiles/classifier_lda.dir/classifier_lda.cpp.o Linking CXX executable classifier_knn Linking CXX executable classifier_lda [ 87%] Built target classifier_gaussiannaivebayes Scanning dependencies of 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examples/undocumented/libshogun/CMakeFiles/classifier_svmlight_string_features_precomputed_kernel.dir/classifier_svmlight_string_features_precomputed_kernel.cpp.o Scanning dependencies of target clustering_kmeans Scanning dependencies of target converter_diffusionmaps [ 89%] Building CXX object examples/undocumented/libshogun/CMakeFiles/clustering_kmeans.dir/clustering_kmeans.cpp.o [ 89%] Building CXX object examples/undocumented/libshogun/CMakeFiles/converter_diffusionmaps.dir/converter_diffusionmaps.cpp.o Linking CXX executable classifier_svmlight_string_features_precomputed_kernel Linking CXX executable clustering_kmeans Linking CXX executable converter_diffusionmaps [ 89%] Built target classifier_svmlight_string_features_precomputed_kernel Scanning dependencies of target converter_factoranalysis [ 89%] [ 89%] Built target clustering_kmeans Building CXX object examples/undocumented/libshogun/CMakeFiles/converter_factoranalysis.dir/converter_factoranalysis.cpp.o Scanning dependencies 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kernel_machine_train_locked Linking CXX executable kernel_revlin Linking CXX executable labels_binary_fit_sigmoid [ 94%] Built target kernel_machine_train_locked Scanning dependencies of target library_circularbuffer [ 94%] [ 94%] Built target kernel_revlin Built target labels_binary_fit_sigmoid Scanning dependencies of target library_gc_array Scanning dependencies of target library_dyn_int [ 94%] Building CXX object examples/undocumented/libshogun/CMakeFiles/library_circularbuffer.dir/library_circularbuffer.cpp.o [ 94%] [ 94%] Building CXX object examples/undocumented/libshogun/CMakeFiles/library_gc_array.dir/library_gc_array.cpp.o Building CXX object examples/undocumented/libshogun/CMakeFiles/library_dyn_int.dir/library_dyn_int.cpp.o Linking CXX executable library_circularbuffer Linking CXX executable library_dyn_int Linking CXX executable library_gc_array [ 94%] Built target library_circularbuffer Scanning dependencies of target library_hash [ 94%] [ 94%] Built target library_dyn_int Building CXX object examples/undocumented/libshogun/CMakeFiles/library_hash.dir/library_hash.cpp.o Scanning dependencies of target library_hdf5 [ 94%] Built target library_gc_array Scanning dependencies of target library_indirect_object [ 94%] Building CXX object examples/undocumented/libshogun/CMakeFiles/library_hdf5.dir/library_hdf5.cpp.o [ 95%] Building CXX object examples/undocumented/libshogun/CMakeFiles/library_indirect_object.dir/library_indirect_object.cpp.o Linking CXX executable library_hash Linking CXX executable library_indirect_object Linking CXX executable library_hdf5 [ 95%] Built target library_hash Scanning dependencies of target library_map [ 95%] Building CXX object examples/undocumented/libshogun/CMakeFiles/library_map.dir/library_map.cpp.o [ 95%] Built target library_hdf5 Scanning dependencies of target library_mldatahdf5 [ 95%] Built target library_indirect_object Scanning dependencies of target library_serialization [ 95%] Building CXX object 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library_set Linking CXX executable mathematics_confidence_intervals Linking CXX executable mathematics_lapack [ 95%] Built target library_set Scanning dependencies of target modelselection_apply_parameter_tree [ 95%] Built target mathematics_confidence_intervals Scanning dependencies of target modelselection_combined_kernel_sub_parameters [ 95%] Building CXX object examples/undocumented/libshogun/CMakeFiles/modelselection_apply_parameter_tree.dir/modelselection_apply_parameter_tree.cpp.o [ 95%] Building CXX object examples/undocumented/libshogun/CMakeFiles/modelselection_combined_kernel_sub_parameters.dir/modelselection_combined_kernel_sub_parameters.cpp.o [ 95%] Built target mathematics_lapack Scanning dependencies of target modelselection_grid_search_kernel [ 95%] Building CXX object examples/undocumented/libshogun/CMakeFiles/modelselection_grid_search_kernel.dir/modelselection_grid_search_kernel.cpp.o Linking CXX executable modelselection_apply_parameter_tree Linking CXX executable 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streaming_onlineliblinear_sparse.cpp:(.text.startup+0x8a): warning: the use ofmktemp' is dangerous, better use mkstemp' ormkdtemp' [100%] Built target streaming_onlineliblinear_sparse Scanning dependencies of target variational_approx_example [100%] Building CXX object examples/undocumented/libshogun/CMakeFiles/variational_approx_example.dir/variational_approx_example.cpp.o [100%] Built target transfer_multitaskleastsquaresregression [100%] Built target transfer_multitasklogisticregression Linking CXX executable variational_approx_example [100%] Built target variational_approx_example [100%] Built target r_doxy2swig [100%] Swig source /home/bee/Downloads/shogun/src/shogun/lib/List.h:71: Warning 314: 'next' is a R keyword, renaming to '_next' /home/bee/Downloads/shogun/src/shogun/structure/GraphCut.h:51: Warning 314: 'next' is a R keyword, renaming to '_next' /home/bee/Downloads/shogun/src/shogun/structure/GraphCut.h:72: Warning 314: 'next' is a R keyword, renaming to '_next' /home/bee/Downloads/shogun/src/shogun/structure/GraphCut.h:93: Warning 314: 'next' is a R keyword, renaming to '_next' constantWrapper : int STRING_LEN = 256 constantWrapper : char STRING_LEN_STR = 256 constantWrapper : char CHAR_CONT_BEGIN = ( constantWrapper : char CHAR_CONT_END = ) constantWrapper : char CHAR_ITEM_BEGIN = { constantWrapper : char CHAR_ITEM_END = } constantWrapper : char CHAR_SGSERIAL_BEGIN = [ constantWrapper : char CHAR_SGSERIAL_END = ] constantWrapper : char CHAR_STRING_BEGIN = [ constantWrapper : char CHAR_STRING_END = ] constantWrapper : char CHAR_SPARSE_BEGIN = ( constantWrapper : char CHAR_SPARSE_END = ) constantWrapper : char CHAR_TYPE_END = \n constantWrapper : char STR_SGSERIAL_NULL = null constantWrapper : char STR_IS_SGSERIALIZABLE = is_sgserializable constantWrapper : char STR_IS_SPARSE = is_sparse constantWrapper : char STR_IS_CONT = is_container constantWrapper : char STR_IS_NULL = is_null constantWrapper : char STR_INSTANCE_NAME = instance_name constantWrapper : char STR_GENERIC_NAME = generic_name constantWrapper : char STR_CTYPE_NAME = container_type constantWrapper : char STR_LENGTH_X = length_x constantWrapper : char STR_LENGTH_Y = length_y constantWrapper : char STR_GROUP_PREFIX = $ constantWrapper : char STR_SPARSE_FPTR = features_ptr constantWrapper : char STR_SPARSEENTRY_FINDEX = feat_index constantWrapper : char STR_SPARSEENTRY_ENTRY = entry constantWrapper : char STR_TRUE = true constantWrapper : char STR_FALSE = false constantWrapper : char STR_ITEM = i constantWrapper : char STR_STRING = s constantWrapper : char STR_SPARSE = r constantWrapper : char STR_PROP_TYPE = type constantWrapper : char STR_PROP_IS_NULL = is_null constantWrapper : char STR_PROP_INSTANCE_NAME = instance_name constantWrapper : char STR_PROP_GENERIC_NAME = generic_name constantWrapper : char STR_PROP_FEATINDEX = feat_index constantWrapper : double M_PI = 3.14159265358979323846 constantWrapper : int RNG_SEED_SIZE = 256 /home/bee/Downloads/shogun/src/shogun/mathematics/Math.h:696: Warning 509: Overloaded method shogun::CMath::random(int64_t,int64_t) effectively ignored, /home/bee/Downloads/shogun/src/shogun/mathematics/Math.h:691: Warning 509: as it is shadowed by shogun::CMath::random(uint64_t,uint64_t). /home/bee/Downloads/shogun/src/shogun/mathematics/Math.h:691: Warning 509: Overloaded method shogun::CMath::random(uint64_t,uint64_t) effectively ignored, /home/bee/Downloads/shogun/src/shogun/mathematics/Math.h:696: Warning 509: as it is shadowed by shogun::CMath::random(int64_t,int64_t). /home/bee/Downloads/shogun/src/shogun/mathematics/Math.h:706: Warning 509: Overloaded method shogun::CMath::random(int32_t,int32_t) effectively ignored, /home/bee/Downloads/shogun/src/shogun/mathematics/Math.h:701: Warning 509: as it is shadowed by shogun::CMath::random(uint32_t,uint32_t). /home/bee/Downloads/shogun/src/shogun/mathematics/Math.h:701: Warning 509: Overloaded method shogun::CMath::random(uint32_t,uint32_t) effectively ignored, /home/bee/Downloads/shogun/src/shogun/mathematics/Math.h:706: Warning 509: as it is shadowed by shogun::CMath::random(int32_t,int32_t). constantWrapper : int DenseLabels_REJECTION_LABEL = shogun::CDenseLabels::REJECTION_LABEL constantWrapper : double DEF_PRECISION = 1E-14 constantWrapper : int INFINITE_D = 1000000000 Scanning dependencies of target r_modular [100%] [100%] Building CXX object src/interfaces/r_modular/CMakeFiles/r_modular.dir/sg_print_functions.cpp.o Building CXX object src/interfaces/r_modular/CMakeFiles/r_modular.dir/modshogunR_wrap.cxx.o Linking CXX shared module modshogun.so Generating modshogun.RData f="modshogun.R"; fdata="modshogun.RData"; source ( f ) ; save ( list=ls ( all=TRUE ) ,file=fdata, compress=TRUE ) ; q ( save="no" ) Error in file(filename, "r", encoding = encoding) : cannot open the connection Calls: source -> file In addition: Warning message: In file(filename, "r", encoding = encoding) : cannot open file 'modshogun.R': No such file or directory Execution halted make[2]: _* [src/interfaces/r_modular/modshogun.so] Error 1 make[1]: * [src/interfaces/r_modular/CMakeFiles/r_modular.dir/all] Error 2 make: * [all] Error 2 bee@localhost:~/Downloads/shogun/build$

[karlnapf]

@beew would you mind not putting such long outputs here directly? You can paste them at https://gist.github.com/

@matthuska thanks for helping!

[matthuska]

I don't see anything obvious in the build output. Can you give me the parameters you used when building hdf5? I'll build a local copy as well and see if I can reproduce your problem.

Also, what version of swig are you using?

[beew]

Hi, It is hdf5-1.8.12 The configure line was

./configure --prefix=$HOME/opt/hdf5 --with-pthread --enable-unsupported --enable-shared --enable-production=yes --enable-parallel=yes --enable-largefile=yes --with-default-api-version=v18"

I copied these options from FENICS' dorsal install script but disabled parallel.

Swig version 2.0.11-1ubuntu2 from the Ubuntu repository

[beew]

I tried with the latest git version today, Karl has added a patch to disable hdf5. I was able to do that and shogun did build successfully without hdf5, but R-modular still failed with the same errors. So they are apparently not hdf5 related.

I currently do have shogun R-Static installed, do I need to remove it first?

[karlnapf]

@beew btw check the latest patch where hdf5 can be disabled, #2656 #2658

And no, R-static does not have to be removed. But it is deprecated anyways.

[beew]

Hi, tried the latest with HDF5 turned OFF but still get errors

Building CXX object src/interfaces/r_modular/CMakeFiles/r_modular.dir/modshogunR_wrap.cxx.o Building CXX object src/interfaces/r_modular/CMakeFiles/r_modular.dir/sg_print_functions.cpp.o Linking CXX shared module modshogun.so Generating modshogun.RData f="modshogun.R"; fdata="modshogun.RData"; source ( f ) ; save ( list=ls ( all=TRUE ) ,file=fdata, compress=TRUE ) ; q ( save="no" ) Error in file(filename, "r", encoding = encoding) : cannot open the connection Calls: source -> file In addition: Warning message: In file(filename, "r", encoding = encoding) : cannot open file 'modshogun.R': No such file or directory Execution halted make[2]: * [src/interfaces/r_modular/modshogun.so] Error 1 make[1]: * [src/interfaces/r_modular/CMakeFiles/r_modular.dir/all] Error 2 make: *\ [all] Error 2

But I found modshogun.R in ~/Downloads/shogun/build/src/interfaces/r_modular and it is 7.6 Mb

[karlnapf]

Could you try to copy the modshogun.R to the place where cmake is looking for it? And double check any file system issues (we every now and then get reports of problems due to insufficient rights and fill file systems here)

[beew]

It is not clear from the error where cmake tries to look for it.

[karlnapf]

I just built r-modular locally and it went fine, my modshogun.R is in shogun/build/src/interfaces/r_modular/modshogun.R and is 7.3MB. So something is weird

[besser82]

Works for me either locally and on Fedora's builders…

can you please give us the output of

ls -lah ~/Downloads/shogun/build/src/interfaces/

I suspect issues with permissions, UMASK and/or Type of Filesystem…

[beew]

Hi, here are the outputs

total 12K drwxrwxr-x 3 bee bee 4.0K Dec 24 13:07 . drwxrwxr-x 4 bee bee 4.0K Dec 24 13:07 .. drwxrwxr-x 4 bee bee 4.0K Dec 24 13:28 r_modular

[beew]

Hi,

I figured it out! I have set my default R work directory to be ~/R in my .Rprofile. I think the installation was looking for path relative to the default R work directory, so that would be ~/R/Downloads/shogun.. which doesn't exist.

After commenting out setwd('~/R') in .Rprofile, R-modular interface builds successfully.

Thanks everyone for helping.

[karlnapf]

Great, @beew ! Maybe we could add this to one of the Readmes. Feel free to send a little patch. Let us know how things go from now!

[dpo]

Any idea where #2395 might come from? I'm still seeing that on Mavericks.

[beew]

Maybe we could add this to one of the Readmes. Feel free to send a little patch. Let us know how things go from now!

Getting back a little late since I have not been using shogun's R interface

I don't know how to fix the codes or make a patch but the problem I think is in

shogun/src/interfaces/r_modular/CMakeLists

More precisely these lines

ADD_CUSTOM_COMMAND(TARGET r_modular
    POST_BUILD
    COMMAND echo 'f="modshogun.R" \; fdata="modshogun.RData" \; source( f ) \; save( list=ls( all=TRUE ) , file=fdata , compress=TRUE ) \; q( save="no" ) \;' | ${R_EXECUTABLE} --silent --no-save
    WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
    COMMENT "Generating modshogun.RData"
)

What follow COMMAND echo are basically commands to be executed in R. When R runs its work directory is given by the function getwd(), in my case this will return the value in ~/.RProfile, which is not my $HOME but a subdirectory of it. I can imagine others may want to set their default R work directory like this too instead of dumping R outputs all over their $HOME

The CMAKE option WORKING_DIRECTORY apparently cannot override the value in ~/.RProfie, so when the shogun build process executes R, it is looking for modshogun.R in WORK_DIRECTORY, which is it's default work directory (defined by .RProfie) rather than ${CMAKE_CURRENT_BINARY_DIR}

Here is my take on it, maybe someone who knows his C++ can just edit these lines so that people don't get tripped over on this little thing in the future (I tried but didn't work)

[besser82]

@beew: Can you confirm the referenced patch fixes this issue?

[beew]

Just saw the link to your change so I manually edited the file. It works. Thanks for fixing this.

[besser82]

Issue resolved.