Open swainasish opened 6 months ago
I used dragmap to generate the bam file and samtool to sort it, the command I used
singularity exec ${megane_sif} call_genotype_38 \ -i $bam_dir \ -fa $ref_genome \ -mk $mk_file \ -outdir $out_dir \ -sample_name test_sample \ -p 10 -skip_unmapped
This author is really unreliable
I used dragmap to generate the bam file and samtool to sort it, the command I used