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shohei-kojima / MEGAnE

MEGAnE
MIT License
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Preperation of repeat library fails #22

Open jayramr opened 3 months ago

jayramr commented 3 months ago

Hi,

Could someone help I'm getting below error after following this section

https://github.com/shohei-kojima/MEGAnE/wiki/Prepare-a-custom-repeat-library-and-annotation-(mostly-for-analysis-of-non-human-WGS)#Preparation-of-repeat-library

wget https://www.dfam.org/releases/Dfam_3.2/families/Dfam_curatedonly.h5.gz
gzip -d Dfam_curatedonly.h5.gz
python famdb.py -i ./Dfam_curatedonly.h5 families -f embl -ad 8355 > Dfam_custom.embl

ERROR:famdb_globals:A partitioned famdb database is not present in db_custom/
There were several *.h5 files present. However, they do not appear
to be in the correct format: Dfam_curatedonly.h5

Please advise

Thanks Jay