showteeth / scfetch

Access and Format Single-cell RNA-seq Datasets from Public Resources
https://showteeth.github.io/scfetch/
GNU General Public License v3.0
30 stars 3 forks source link

Human Cell Atlas subset #7

Closed showteeth closed 5 months ago

showteeth commented 5 months ago

There may be multiple outputs of a dataset in Human Cell Atlas, e.g., raw, filtered h5ad files, which make it difficult to identify/merge useful files automatically. Instead, we updated ParseHCA to return metadata of downloaded files, users can choose useful files.