shraddhapai / IdeoViz

Plots data associated with genomic intervals along chromosomal ideogram.
GNU General Public License v2.0
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ylab and xlab arguments of plotOnIdeo() have no effect #1

Open FarzanT opened 6 years ago

FarzanT commented 6 years ago

Hello, The following code (mentioned in the package user guide) does not label the axes when the chromosomes are plotted horizontally.

plotOnIdeo(chrom=seqlevels(binned_multiSeries), # which chrom to plot?
                    ideoTable=ideo, # ideogram name
                    values_GR=binned_multiSeries, # data goes here
                    value_cols=colnames(mcols(binned_multiSeries)), # col to plot col=brewer.pal(n=5, 'Spectral'), # colours
                    val_range=c(0,10), # set y-axis range
                    ylab="array intensities",
                    plot_title="Trendline example")
shraddhapai commented 6 years ago

Thanks @FarzanT I'll take a look. Could be a couple weeks before I get back to this.