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Fig. 5 Data Availability #15

Closed pondandmoon closed 1 month ago

pondandmoon commented 1 month ago

Hi authors,

I'm very interested in the MaxFuse algorithm and I'm attempting to reproduce the tri-modal integration task shown in Figure 5 of your paper. I've been following the procedures outlined in the CL_tri-integration.ipynb and SB_tri-integration.ipynb notebooks. I was wondering if it would be possible to provide the following data:

  1. Count matrices for: CODEX data scRNA-seq data scATAC-seq data Gene Activity score for scATAC-seq

  2. Related metadata information for each of these datasets

Thanks a lot!

BokaiZhu commented 1 month ago

Hi,

Thanks for being interested in the method.

All the input and output files related to the script CL_tri-integration.ipynb can be find here in the folder: https://www.dropbox.com/scl/fo/nublgggr6d2lnox4mcyod/AP5SWIqtIWwW4RZ1hlyLAlA?rlkey=40wwxtvz7fcairfyo55210eog&dl=0 Let me know if you any questions related to that.

Note that the folder does not contain files related to SB_tri-integration.ipynb; Some files related to that (CODEX) I don't have them immediately available: unfortunately the original server containing them is temporarily down right now; but if needed, I can regenerate them from source locally, it just need to take some extra time -- let me know if they are also needed for your case.

Best, Bokai

pondandmoon commented 1 month ago

Thank you so much for your help! This is incredibly useful. Looking forward to seeing more of your amazing work!