add models - Githubissues

shuzhao-li-lab / JMS

Json's Metabolite Services

MIT License

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add models #1

Open gmhhope opened 2 years ago

gmhhope commented 2 years ago

draft-genome 2 GEM 2 JMS

[ ] CarveMe converted GEM model
[ ] ModelSEED converted GEM model
- [x] fetching from universal model to populate metabolite formula, identifiers
- fetching from universal model to generate reaction, pathway
  existed GEM models
[x] AGORA models
- [ ] needs to use the AGORA metabolite table to populate identifiers in db-ids fields
[x] EBI models (However all the model don't have pathway information)

Other GEMs model

[x] Human-GEM
[x] All other metabolicATLAS models except Fruitfly-GEM
- yeast-GEM don't have pathway information
- [ ] Fruitfly-GEM, bug needs to be fixed before moving on