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shuzhao-li-lab / asari

asari, metabolomics data preprocessing
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Errorred running docker pull shuzhao/asari #20

Closed amnahsiddiqa closed 2 years ago

amnahsiddiqa commented 2 years ago

Using default tag (latest) would return error: 

(base) MLG-JGM353:~ siddia$ docker pull shuzhao/asari
Using default tag: latest
Error response from daemon: manifest for shuzhao/asari:latest not found: manifest unknown: manifest unknown
amnahsiddiqa commented 2 years ago

Solution

use specific asari version based tag instead: 

(base) MLG-JGM353:~ siddia$ docker pull shuzhao/asari:1.9.2
1.9.2: Pulling from shuzhao/asari
d8b55b2b6839: Pull complete 
711167e5dcf3: Pull complete 
2521a8d4cbbc: Pull complete 
3df1ce28b929: Pull complete 
371e0958329a: Pull complete 
cc67ea540a44: Pull complete 
Digest: sha256:68285a4778bd80aa346605dc88361a143b90405790e25931a4a9f01730aca997
Status: Downloaded newer image for shuzhao/asari:1.9.2
docker.io/shuzhao/asari:1.9.2
(base) MLG-JGM353:~ siddia$
gmhhope commented 2 years ago

Is the Asari under development? @amnahsiddiqa 

pip3 install asari-metabolomics --upgrade
The folder you are executing pip from can no longer be found.

I will also try docker now.

amnahsiddiqa commented 2 years ago

@gmhhope No. I can tell more if I know more details of your system etc (its organizational/personal what macOS ); also just FYI I just installed it right now and there is no problem on my end. Docker is best to use.

amnahsiddiqa commented 2 years ago

Also the error sounds to me like you were using a virtual environment?

gmhhope commented 2 years ago

Yes, docker is running fine.

Thanks!

On Fri, Jul 22, 2022 at 7:00 AM Amnah Siddiqa @.***> wrote:

Also the error sounds to me like you were using a virtual environment?

— Reply to this email directly, view it on GitHub https://github.com/shuzhao-li/asari/issues/20#issuecomment-1192453338, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADDBUIPUC3QTRPW7UYUR26TVVJ5NPANCNFSM54IUUJPQ . You are receiving this because you were mentioned.Message ID: @.***>

shuzhao-li commented 1 year ago

Yes sounds like MG deleted his venv.

On Fri, Jul 22, 2022 at 7:00 AM Amnah Siddiqa @.***> wrote:

Also the error sounds to me like you were using a virtual environment?

— Reply to this email directly, view it on GitHub https://github.com/shuzhao-li/asari/issues/20#issuecomment-1192453338, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJGHKF3D67P5HA5CVRIXOKLVVJ5NPANCNFSM54IUUJPQ . You are receiving this because you are subscribed to this thread.Message ID: @.***>