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shuzhao-li-lab / asari

asari, metabolomics data preprocessing
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Asari viz is broken #52

Closed jmmitc06 closed 1 year ago

jmmitc06 commented 1 year ago

AttributeError: 'Series' object has no attribute 'hvplot'. Did you mean: 'plot'? MLG-JGM444:Asari_for_Steve mitchjo$ asari viz --input=._asari_project_76102711/



//*Asari dashboard*//   Press Control-C to exit.
Traceback (most recent call last):
  File "/opt/homebrew/bin/asari", line 8, in <module>
    sys.exit(main())
             ^^^^^^
  File "/opt/homebrew/lib/python3.11/site-packages/asari/main.py", line 172, in main
    dashboard(project_desc, cmap, epd, Ftable)
  File "/opt/homebrew/lib/python3.11/site-packages/asari/dashboard.py", line 279, in dashboard
    summary = get_summary_panel(project_desc, peakDict, epdDict, Ftable, cmap)
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/homebrew/lib/python3.11/site-packages/asari/dashboard.py", line 222, in get_summary_panel
    mz_distribution = Ftable['mz'].hvplot.hist(bins=num_bins, tools=[], 
                      ^^^^^^^^^^^^^^^^^^^
  File "/opt/homebrew/lib/python3.11/site-packages/pandas/core/generic.py", line 5902, in __getattr__
    return object.__getattribute__(self, name)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: 'Series' object has no attribute 'hvplot'. Did you mean: 'plot'?
jmmitc06 commented 1 year ago

This was due to an import problem. This is now fixed.