jmmitc06
commented
10 months ago Thanks for bringing this to my attention. Some additional information would be helpful here though. This seems to be a problem with a third-party library, not asari per se and I'm curious if this is a versioning issue? Can you replicate the problem outside of anaconda or with a new venv?
Nov 10, 2023 10:53:09 AM feranmi-arcaea @.***>:
ValueError: Unexpected option 'legend_opts' for Curve type across all extensions. Similar options for current extension ('bokeh') are: ['backend_opts'].
///Asari dashboard/// Press Control-C to exit. Traceback (most recent call last): File "/home/bugs/miniconda3/bin/asari", line 8, in sys.exit(main()) File "/home/bugs/miniconda3/lib/python3.10/site-packages/asari/main.py", line 209, in main viz(parameters, args) File "/home/bugs/miniconda3/lib/python3.10/site-packages/asari/main.py", line 79, in viz dashboard(project_desc, cmap, epd, Ftable) File "/home/bugs/miniconda3/lib/python3.10/site-packages/asari/dashboard.py", line 281, in dashboard summary = get_summary_panel(project_desc, peakDict, epdDict, Ftable, cmap) File "/home/bugs/miniconda3/lib/python3.10/site-packages/asari/dashboard.py", line 248, in get_summary_panel RTAlign = prepare_rt_alignment(cmap).hvplot.line(title="Retention Time Deviation vs Retention Time",xlabel="Retention Time (sec)", File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/core/accessors.py", line 44, in pipelined_call result = call(*args, kwargs) File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/core/accessors.py", line 579, in call return self._dispatch_opts( *args, *kwargs) File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/core/accessors.py", line 583, in _dispatch_opts return self._base_opts(args, kwargs) File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/core/accessors.py", line 661, in _base_opts return self._obj.options(*new_args, kwargs) File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/core/data/init.py", line 196, in pipelined_fn result = method_fn(*args, *kwargs) File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/core/data/init.py", line 1209, in options return super().options(args, kwargs) File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/core/dimension.py", line 1272, in options expanded_backends = [(backend, opts._expand_options(options, backend))] File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/util/init.py", line 366, in _expand_options cls._options_error(opt, objtype, backend, valid_options) File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/util/init.py", line 407, in _options_error raise ValueError(f'Unexpected option {opt!r} for {objtype} type ' ValueError: Unexpected option 'legend_opts' for Curve type across all extensions. Similar options for current extension ('bokeh') are: ['backend_opts'].
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feranmi-arcaea
ValueError: Unexpected option 'legend_opts' for Curve type across all extensions. Similar options for current extension ('bokeh') are: ['backend_opts'].
//Asari dashboard// Press Control-C to exit. Traceback (most recent call last): File "/home/bugs/miniconda3/bin/asari", line 8, in
sys.exit(main())
File "/home/bugs/miniconda3/lib/python3.10/site-packages/asari/main.py", line 209, in main
viz(parameters, args)
File "/home/bugs/miniconda3/lib/python3.10/site-packages/asari/main.py", line 79, in viz
dashboard(project_desc, cmap, epd, Ftable)
File "/home/bugs/miniconda3/lib/python3.10/site-packages/asari/dashboard.py", line 281, in dashboard
summary = get_summary_panel(project_desc, peakDict, epdDict, Ftable, cmap)
File "/home/bugs/miniconda3/lib/python3.10/site-packages/asari/dashboard.py", line 248, in get_summary_panel
RTAlign = prepare_rt_alignment(cmap).hvplot.line(title="Retention Time Deviation vs Retention Time",xlabel="Retention Time (sec)",
File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/core/accessors.py", line 44, in pipelined_call
result = call(*args, kwargs)
File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/core/accessors.py", line 579, in call
return self._dispatch_opts( *args, *kwargs)
File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/core/accessors.py", line 583, in _dispatch_opts
return self._base_opts(args, kwargs)
File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/core/accessors.py", line 661, in _base_opts
return self._obj.options(*new_args, kwargs)
File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/core/data/init.py", line 196, in pipelined_fn
result = method_fn(*args, *kwargs)
File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/core/data/init.py", line 1209, in options
return super().options(args, kwargs)
File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/core/dimension.py", line 1272, in options
expanded_backends = [(backend, opts._expand_options(options, backend))]
File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/util/init.py", line 366, in _expand_options
cls._options_error(opt, objtype, backend, valid_options)
File "/home/bugs/miniconda3/lib/python3.10/site-packages/holoviews/util/init.py", line 407, in _options_error
raise ValueError(f'Unexpected option {opt!r} for {objtype} type '
ValueError: Unexpected option 'legend_opts' for Curve type across all extensions. Similar options for current extension ('bokeh') are: ['backend_opts'].