MAX_RETENTION_SHIFT can be from CLI arg --max_retention_shift but is not actually used because:
chromatogram.rt_lowess_calibration uses clean_rt_calibration_points, which filters out any pair of scan numbers differing > 3x stdev.
Two related notes:
RT is scan number in asari by default.
np.inf is not be used without strong justification. Max scan number is available per experiment.
MAX_RETENTION_SHIFT can be from CLI arg
--max_retention_shiftbut is not actually used because:chromatogram.rt_lowess_calibration uses
clean_rt_calibration_points, which filters out any pair of scan numbers differing > 3x stdev.Two related notes: RT is scan number in asari by default. np.inf is not be used without strong justification. Max scan number is available per experiment.