Open nlapier2 opened 1 month ago
Are you running this on a shared compute cluster? I suspect that the plink process got killed due to lack of resources (e.g. out of memory error, storage space, etc.). How many samples/variants are there in this BED file?
In the latest version of magenpy
, I added ways to detect these errors that arise on plink
's side, but it's not always perfect.
Hello,
I have a plink bfile from the UK Biobank
...and I am trying to create an LD matrix for it:
...but this causes an error:
Appreciate any help!