Open mtnouchi opened 3 years ago
Hi we would try to find what happens. @euphemizm an idea?
@beatrice79 ?
Hi could you retry your input on pftools version 3.2.12?
A number of processor affinity issues have been fixed in the meantime.
Hello,
Thanks for taking the trouble to address such very tricky issues. But, unfortunately, the same error appeared again in version 3.2.12... :(
Hello,
I used
ps_scan.pl
to search for motifs in a protein against PROSITE release 2021_03, but the program crashed with the following error:Here are the details of the run:
ps_scan.pl: Revision 1.90pfscanV3: I downloaded pftools3-3.2.6 and built it following the instructions inINSTALL
. According tomake test
, the installation was done properly. A series of commands were installed in/usr/local/bin/
ps_scan.pl & pfscanV3: This error was reproduced with the docker image
sibswiss/pftools:3.2.6
.execution command:
With the older version, there was no error (no hit found, either).
The input sequence: It seems that the problem occurs when
test.faa
contains the following.Here I have shown a minimal input that reproduces the error. In practice, however, I am scanning so many sequences that it is impractical to exclude error-causing inputs. Any suggestions on how to handle this?
Thank you.