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sib-swiss / pftools3

A suite of tools to build and search generalized profiles
GNU General Public License v2.0
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pfscanV3 error #27

Closed sschrstn closed 2 years ago

sschrstn commented 2 years ago

Hi, I'm running a tool called conodictor and it uses pfscan as one of its dependencies. I tried running it but it stopped due to this error:

Traceback (most recent call last): File "/conodictor/conodictor", line 1044, in main() File "/conodictor/conodictor", line 393, in main msg(f"Running PSSM prediction using pfscan v{pfscan_match[0]}") IndexError: list index out of range

smoretti commented 2 years ago

Linked to https://github.com/koualab/conodictor/issues/11

smoretti commented 2 years ago

Hi @cmcflrc

pftools before version 3.2.11 had an issue with processor affinity. It could happen with recent Linux kernels and/or on old CPU architectures.

Is it fixed on your side?