Mismatching the single-end setting and bam file will cause errors that are cryptic.
In the read me, I should add a statement mentioning that care should be taken so that there isn't a mismatch i.e. the paired-end option shouldn't be used for a single-end bam.
Mismatching the single-end setting and bam file will cause errors that are cryptic.
In the read me, I should add a statement mentioning that care should be taken so that there isn't a mismatch i.e. the paired-end option shouldn't be used for a single-end bam.