The advice in the DESeq2 vignette on pre-filtering has been updated since when (in the very dim and distant past), we wrote the code in get_deseq2_dataset (). We could think about updating this code, because we're probably unnecessarily keeping a lot of barely-expressed genes in our analysis.
The advice in the DESeq2 vignette on pre-filtering has been updated since when (in the very dim and distant past), we wrote the code in
get_deseq2_dataset (). We could think about updating this code, because we're probably unnecessarily keeping a lot of barely-expressed genes in our analysis.