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sidhomj / DeepTCR

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
https://sidhomj.github.io/DeepTCR/
MIT License
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Extract accuracy of decoded TCRs from Sequence_inference #56

Closed JulianSpagnuolo closed 2 years ago

JulianSpagnuolo commented 2 years ago

I'd like to get the encoding accuracy of TCRs encoded on a VAE model trained on an initial dataset. i.e. How could I extract the encoding accuracy as well as the latent encoded variables from DTCRU.Sequence_Inference()?

sidhomj commented 2 years ago

The way the method is written write now, there is no way to extract the accuracy during inference. This is something I will put as something to consider adding in a future release. As for getting the latent variables, the output of the method returns the latent encodings.