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sidhomj / DeepTCR

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
https://sidhomj.github.io/DeepTCR/
MIT License
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Getting an import error when running 'from DeepTCR.DeepTCR import DeepTCR_U' #59

Closed dstcr closed 2 years ago

dstcr commented 2 years ago

ImportError: Bio.Alphabet has been removed from Biopython. In many cases, the alphabet can simply be ignored and removed from scripts. In a few cases, you may need to specify the molecule_type as an annotation on a SeqRecord for your script to work correctly. Please see https://biopython.org/wiki/Alphabet for more information.

sidhomj commented 2 years ago

make sure you are using the right version of biopython. biopython==1.76