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sidhomj / DeepTCR

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
https://sidhomj.github.io/DeepTCR/
MIT License
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Shared Motif for Clusters after Phenograph clustering #69

Open jkbenotmane opened 2 years ago

jkbenotmane commented 2 years ago

Hello Mr. Sidhom, thank you for creating DeepTCR! I am using the supervised Sequence Classifier, including HLA Supertypes for Samples from different Patients and Treatments. My Question now is: Is it possible to extract shared Motifs for each Cluster that are common? As DTCRSS.Representative_Sequences() as well as DTCR_SS.Motif_Identification() do extract explicitly the Sample specific Motifs if I understood correctly ? Thank you in Advance for your help!