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sidhomj / DeepTCR

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
https://sidhomj.github.io/DeepTCR/
MIT License
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example input hla files #8

Closed hejing3283 closed 4 years ago

hejing3283 commented 5 years ago

Would be possible to provide some example files for the HLA type? Thanks a lot!

sidhomj commented 5 years ago

do you want a tutorial or do you want real data?

hejing3283 commented 5 years ago

Either way is good. I just want to make sure I am formatting the hla data correctly.

Best, Jing

On May 10, 2019, at 16:54, John-William Sidhom notifications@github.com wrote:

do you want a tutorial or do you want real data?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or mute the thread.

hejing3283 commented 5 years ago

Hi, for the hla file. now I have each row like

./data/label_A/file_A.csv,02:01,11:01,35:01,57:01

Is this a correct format?

sidhomj commented 5 years ago

The file name does not need the complete path. just the file name itself. Yes, that looks correct.

hejing3283 commented 5 years ago

Got you! Thanks!

On Tue, May 14, 2019 at 5:16 PM John-William Sidhom < notifications@github.com> wrote:

The file name does not need the complete path. just the file name itself. Yes, that looks correct.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/sidhomj/DeepTCR/issues/8?email_source=notifications&email_token=AAUAIIPJ3Q35DMIH6JBU7OLPVMT4DA5CNFSM4HMF5TOKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODVM2BDQ#issuecomment-492413070, or mute the thread https://github.com/notifications/unsubscribe-auth/AAUAIILHDDOCK2XL34MJBHLPVMT4DANCNFSM4HMF5TOA .

-- Cheers! Jing