Information needed for report? - Githubissues

sidora-tools / sidora.cli

A CLI for terminal based data extraction and summary for the MPI-SHH Department of Archaeogenetics PANDORA Database

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Information needed for report? #3

Open jfy133 opened 4 years ago

jfy133 commented 4 years ago

Ideas:

Background

Site name, location (based on our knowledge)
Sample names in this report/description with Pandora name structure
Project name

Technical

Library type
Sequencer
Reads sequence
Endogenous DNA
Contamination?

Results

Simple terms how well preserved
Is damage present (depending on library type)
biological sex (pop gen)
Approximate location on PCA (if available in Pandora??)

Acknowledgments

Project leader (from project)
Lab worker (from sampling-capture tabs)

jfy133 commented 4 years ago

Would we want different variants?

Basic
Pop gen
Microbiome
Pathogens

Also

One for a single samples (richer metadata in text)
One for multiple samples (more tabular)