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signalbash / how_are_we_stranded_here

Check strandedness of RNA-Seq fastq files
MIT License
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Containers... #16

Open BarryDigby opened 2 years ago

BarryDigby commented 2 years ago

Containers for the win lads.

docker pull barryd237/how_are_we_stranded_here

or

singularity pull --name hawsh.img docker://barryd237/how_are_we_stranded_here

@ the devs, just stick these files in the repo and trigger automated builds?

environment.yml:

name: HAWSH
channels:
 - bioconda
 - conda-forge
dependencies:
 - python==3.6.0
 - kallisto==0.44
 - rseqc
 - pip 
 - pip:
   - how_are_we_stranded_here

Dockerfile:

FROM nfcore/base:1.14
LABEL authors="@BarryDigby" \
    description="Docker image for signalbash/how_are_we_stranded_here"

COPY environment.yml /

RUN conda env create --quiet -f /environment.yml && conda clean -a

ENV PATH /opt/conda/envs/HAWSH/bin:$PATH

RUN conda env export --name HAWSH > how_are_we_stranded_here.yml