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signaturescience
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metscale
MetScale: snakemake workflows to scale metagenome analyses
BSD 3-Clause "New" or "Revised" License
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Can not download the mtsv_db
#36
540889956
opened
2 months ago
1
Updated containers. Minor fixes for DL targz file
#35
cgrahlm
closed
5 months ago
0
Offline setup fails, cannot fetch Singularity images
#34
axiao19
opened
9 months ago
7
Bump requests from 2.24.0 to 2.31.0 in /workflows
#33
dependabot[bot]
opened
1 year ago
0
Add newer/additional Kraken DBs for DQT/taxasaurus rex
#32
mtisza1
opened
1 year ago
1
adding module to query entire lineages, query_taxon_clades.py, in que…
#31
mtisza1
opened
1 year ago
0
fixing error with unfound taxIDs
#30
mtisza1
closed
1 year ago
0
Modularized main script
#29
nsapoval
closed
1 year ago
0
changes in _parsing.py
#28
gromdimon
closed
1 year ago
0
Merges
#27
gromdimon
closed
1 year ago
0
Attempt to split the script
#26
gromdimon
closed
1 year ago
1
Bump numpy from 1.19.4 to 1.22.0 in /workflows
#25
dependabot[bot]
closed
1 year ago
0
Mg 326
#24
genignored
closed
3 years ago
0
master_merge_to_MG-326
#23
genignored
closed
3 years ago
0
Mg 328
#22
genignored
closed
3 years ago
0
Mg 290
#21
genignored
closed
3 years ago
0
Differences in source code vs. git checkout for v1.4
#20
redekarnr
closed
3 years ago
1
Issues with activating sourmash_2.1.0--py27he1b5a44_0.sif container
#19
redekarnr
closed
3 years ago
2
Mg 309
#18
genignored
closed
3 years ago
0
Update heatmap text
#17
chulmelowe
closed
3 years ago
0
Snakemake workflow to create final report
#16
stephenturner
opened
5 years ago
0
fix typo in output message
#15
stephenturner
closed
5 years ago
0
Simplification of sample input into config files
#14
lovettse
closed
5 years ago
2
example_workflowsettings.json should be replaced with the one in the wiki
#13
lovettse
closed
5 years ago
2
Inconsistent use of taxonomic_classification vs taxclass
#12
lovettse
closed
5 years ago
2
Feature request: Final report
#11
lovettse
closed
5 years ago
5
read_filtering_khmer_count_unique_kmers_workflow naming is inconsistent
#10
lovettse
closed
5 years ago
2
Feature request: Higher-level workflows
#9
lovettse
opened
5 years ago
1
Data directory is disorganized
#8
lovettse
opened
5 years ago
2
Taxonomic classification Snakefile attempts to connect to internet on air-gapped system
#7
lovettse
closed
5 years ago
2
interruption of the assembly with metaspades mode
#6
strongbeamsprout
closed
5 years ago
2
Problem with running Assembly
#5
Dreycey
closed
5 years ago
4
add additional adapter / contaminant sequences
#4
stephenturner
closed
5 years ago
1
add combined adapters file
#3
stephenturner
closed
5 years ago
2
add adapters file
#2
stephenturner
closed
5 years ago
0
Do not require copying/linking/renaming input data
#1
standage
opened
5 years ago
2