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signaturescience / skater

SKATE R Utilities
https://signaturescience.github.io/skater/
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Affected Status #5

Closed genignored closed 3 years ago

genignored commented 3 years ago

Getting an error with my .fam file, trying to replicate. 

library('skater')
peds <- fam2ped("./famfile-everyone.fam")
Error: Problem with `mutate()` input `ped`.
✖ Invalid code for affected status
ℹ Input `ped` is `purrr::map(...)`.

fam file is:

testped1 testped1_g1-b1-s1 0 0 2 -9
testped1 testped1_g1-b1-i1 0 0 1 -9
testped1 testped1_g2-b1-s1 0 0 1 1
testped1 testped1_g2-b1-i1 testped1_g1-b1-i1 testped1_g1-b1-s1 2 1
testped1 testped1_g2-b1-i2 testped1_g1-b1-i1 testped1_g1-b1-s1 1 1
testped1 testped1_g2-b2-s1 0 0 2 1
testped1 testped1_g2-b2-i1 testped1_g1-b1-i1 testped1_g1-b1-s1 1 1
testped1 testped1_g2-b2-i2 testped1_g1-b1-i1 testped1_g1-b1-s1 1 1
testped1 testped1_g3-b1-i1 testped1_g2-b1-s1 testped1_g2-b1-i1 1 1
testped1 testped1_g3-b1-i2 testped1_g2-b1-s1 testped1_g2-b1-i1 1 1
testped1 testped1_g3-b2-s1 0 0 2 1
testped1 testped1_g3-b2-i1 testped1_g2-b1-s1 testped1_g2-b1-i1 1 1
testped1 testped1_g3-b2-i2 testped1_g2-b1-s1 testped1_g2-b1-i1 1 1
testped1 testped1_g3-b3-i1 testped1_g2-b2-i1 testped1_g2-b2-s1 1 1
testped1 testped1_g3-b3-i2 testped1_g2-b2-i1 testped1_g2-b2-s1 1 1
testped1 testped1_g3-b4-s1 0 0 2 1
testped1 testped1_g3-b4-s2 0 0 2 1
testped1 testped1_g3-b4-i1 testped1_g2-b2-i1 testped1_g2-b2-s1 1 1
testped1 testped1_g3-b4-i2 testped1_g2-b2-i1 testped1_g2-b2-s1 1 1
testped1 testped1_g4-b1-i1 testped1_g3-b2-i1 testped1_g3-b2-s1 2 1
testped1 testped1_g4-b1-i2 testped1_g3-b2-i1 testped1_g3-b2-s1 1 1
testped1 testped1_g4-b1-i3 testped1_g3-b2-i1 testped1_g3-b2-s1 1 1
testped1 testped1_g4-b2-i1 testped1_g3-b4-i1 testped1_g3-b4-s1 1 1
testped1 testped1_g4-b2-i2 testped1_g3-b4-i1 testped1_g3-b4-s1 1 1
testped1 testped1_g4-b2-i3 testped1_g3-b4-i1 testped1_g3-b4-s1 1 1
testped1 testped1_g4-b3-i1 testped1_g3-b4-i1 testped1_g3-b4-s2 2 1
testped1 testped1_g4-b3-i2 testped1_g3-b4-i1 testped1_g3-b4-s2 1 1
testped1 testped1_g4-b3-i3 testped1_g3-b4-i1 testped1_g3-b4-s2 1 1
stephenturner commented 3 years ago

@genignored good catch, pull, rebuild, try again