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sigven / cpsr

Cancer Predisposition Sequencing Reporter (CPSR)
https://sigven.github.io/cpsr/
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make infromation like ckb to cpsr #38

Closed asmlgkj closed 2 years ago

asmlgkj commented 2 years ago

Thanks a lot for this awesome tool have you ever noticed a database name ckb, can you add variant description and PMID, thanks a lot image

sigven commented 2 years ago

Hi,

Thanks for your suggestion! The key challenge with resources such like the one you mention is the terms of use and licensing agreements (e.g. pay particular attention to point 2.3 in the licencing agreement of CKB). Resources bundled with CPSR should be freely available, with an open access policy. Unfortunately, and as stated in the licensing agreement, CKB is very constrained in this regard.

thanks, Sigve

asmlgkj commented 2 years ago

thanks a lot is there any way to collect information like that not from the database?

sigven commented 2 years ago

CPSR utilizes information (e.g. therapeutic germline biomarkers) from CIViC, which is somwhat similar in nature to the CKB resource. I suggest you try exploring that resource if you like.

asmlgkj commented 2 years ago

thanks a lot, there is still some difference, thanks a lot