PCGR data bundle is not compliant with the software version

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Whenever you encounter an error, please also include:

• [ 0.10.14] Version of PCGR.
• [grch38 ] Genome build (grch37/grch38).
• [ ] the complete command you used to invoke pcgr (including all explicit options)
• [2022-02-06 12:15:16 - pcgr-validate-arguments-input - ERROR - The PCGR data bundle is not compliant with the software version - please download the latest software and data bundle (see https://github.com/sigven/pcgr for instructions) ] the full error message

Whenever possible, please also provide links to query VCF file.

Additional context

I have placed pcgr into a conda instance running on singularity on our HPC - it works find but the link to the data bundle is out of date - do you have newer links please?

[sigven]

Hi Andrew, Thanks for reaching out! We are very close to making the version you have in your conda instance official (that is, as announced through the master branch on https://github.com/sigven/pcgr, all the latest developments are currently in a dedicated development branch (https://github.com/sigven/pcgr/tree/dev). We'll try to tag the versions in the development branch more explicitly as dev versions moving forward, you are not the first one who have installed these latest (but not officially released) versions :-)

You are of course free to download the latest bundle, which will go into release shortly, please have a look at the new website with updated installation instructions and link to the databundle: https://sigven.github.io/pcgr/articles/installation.html.

Sorry for the inconvience,

regards, Sigve

[sigven]

Btw, the new Conda release of PCGR will also give you direct access to CPSR (cancer predisposition analysis reporting): https://github.com/sigven/cpsr/tree/dev https://sigven.github.io/cpsr

best, Sigve

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Thank you.. just pushing through a couple of issues with it, will record as new issues