Pick trans consequence patch

sigven / pcgr

Personal Cancer Genome Reporter (PCGR)

https://sigven.github.io/pcgr

MIT License

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Closed sigven closed 1 year ago

sigven commented 1 year ago

Fixed a bug for picking transcript consequence: https://github.com/sigven/pcgr/issues/205
Choice of primary transcript consequence should now be more robust under the pick_allele_gene scheme when running VEP; exonic variants are prioritized when multiple gene transcript consequences are picked by VEP