sii-companion / companion

A genome annotation tool for more than just protists
https://companion.ac.uk/
ISC License
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Fix distribution gff errors #55

Closed haessar closed 3 weeks ago

haessar commented 3 weeks ago

reinstate iterating through all exons to remove leaves with pcall remove_leaf

I believe this was the cause of an error further downstream where jobs were failing during make_distribution_gff process. Genes were being incorrectly split in split_splice_models_at_gaps, which meant that child features were not contained in the range of the parent gene.

haessar commented 3 weeks ago

Tested successfully on dev