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silx-kit / jupyterlab-h5web

A JupyterLab extension to explore and visualize HDF5 file contents. Based on https://github.com/silx-kit/h5web.
MIT License
65 stars 8 forks source link

Support of loom files #126

Closed Denebium closed 10 months ago

Denebium commented 10 months ago

Hi, I use the H5Web VScode extension, witch is very similar to this one. With the VScode extension, I am able to open loom files directly (a HDF5 file format for genetic data, see https://loompy.org/ ), would it be possible to add .loom to the supported file format ?

Thanks !

Link to the VScode extension : https://marketplace.visualstudio.com/items?itemName=h5web.vscode-h5web

loichuder commented 10 months ago

Sure ! Just out of curiosity, could you provide an example .loom file ?

Thanks

Denebium commented 10 months ago

Thanks a lot !

Here is the classical exemple of a loom test file, freely available on the 10x genomics website : https://support.10xgenomics.com/single-cell-gene-expression/datasets/3.0.0/pbmc_10k_v3

Along with specifications and specs for the format of loom files : https://linnarssonlab.org/loompy/format/index.html