I am trying to run papara and getting the following error:
illegal character in file '/home/metagenomica/LABRESIS/OtavioLovison/COVID19Microbiomes/alignedrefseq.phy'
row: 1 (name: 81531021)
col: 1 (char: '|')
I am exporting the phylip file using RStudio, doing the following:
alignedrefseq <- read.phyDat("/home/metagenomica/Bancos_de_dados/HOMD_16S_rRNA_RefSeq_V15.22.aligned.fasta", "fasta", type = "DNA")
write.phyDat(alignedrefseq, "alignedrefseq.phy", format = "phylip", colsep = "")
Hello!
I am trying to run papara and getting the following error:
illegal character in file '/home/metagenomica/LABRESIS/OtavioLovison/COVID19Microbiomes/alignedrefseq.phy' row: 1 (name: 81531021) col: 1 (char: '|')
I am exporting the phylip file using RStudio, doing the following: alignedrefseq <- read.phyDat("/home/metagenomica/Bancos_de_dados/HOMD_16S_rRNA_RefSeq_V15.22.aligned.fasta", "fasta", type = "DNA") write.phyDat(alignedrefseq, "alignedrefseq.phy", format = "phylip", colsep = "")
Any idea on how to correct this?
Thanks in advance!