search

siminegroup / E2EDNA2

GNU General Public License v3.0
17 stars 7 forks source link

Lightdock Rust nucleic support #5

Closed brianjimenez closed 2 years ago

brianjimenez commented 2 years ago

Dear E2DNA2 developers,

Since you are using LightDock in some parts of your pipeline, it could be of your interest the 0.2.0 release of the Rust implementation of the framework. This new release adds support for protein-nucleic complex prediction and typically runs 5x-6x faster compared to the Python+C implementations of the Python LightDock flavor, and two orders of magnitude less amount of memory. There is more information on how to compile and use the Rust version here.

Hope it helps!

InfluenceFunctional commented 2 years ago

@brianjimenez Thanks for the info here. Sounds like a nice upgrade on the already quite good (from our point of view) LightDock performance. We'll definitely keep it in mind!

brianjimenez commented 2 years ago

Glad LightDock is helpful for your project. Please, don't hesitate to contact me if you find any problem using LightDock or you have any question.

taoliu032 commented 2 years ago

Certainly!